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The map label for this gene is nodD1 [H]

Identifier: 27364419

GI number: 27364419

Start: 987844

End: 988809

Strand: Reverse

Name: nodD1 [H]

Synonym: VV1_0984

Alternate gene names: 27364419

Gene position: 988809-987844 (Counterclockwise)

Preceding gene: 27364420

Following gene: 27364415

Centisome position: 30.13

GC content: 52.38

Gene sequence:

>966_bases
ATGGGCGTGGATAGGAGCTTCAACGTGGAGTTGGAAGAGATTTACCGTCGAGATCTGAATTTGCTGGTGGCGCTGCGAGT
GTTAATTGAAGAAAGCAGTGTCAGCAAAGCCGCAGTGCGTTTGAATCTCAGTCAATCTGCGATGAGTCGAGTGTTGGGGC
GCTTGCGCGATTTGCTTGGCGACCCGCTGTTTACGCGTGAAGGGCAGCATTTATTGCCGACTGAAAAAGCCTTGGAGATC
GATCGGGCTCTCGGCGAGCCACTGGAATCGTTACGTCAATTGCTCTCTCCATCTGAGTTTGATCCTCATCTCTGCACTCA
AACGTTTACCATCGCCACCACTGATTACGCGATGCAGACGATCTTGCCGTTTGCTCTGCCGAGGATCTACCAAGAAGCGC
CCAATGTGTCGTTTCATTTTCTTCCTTTGCAACACGATCGCTTGGCGGATCAGTTGACGTATGAAGGGGCTGATCTGGCG
ATTTGCCGTCCCACAGGTCCGGTTGAACCGCTGCGTAGCGAAGTCTTGGGCCGAGTGGGGGTGCTGTGTTTGCTTTCCAA
ACAGCATCCGCTCGCGGGAAAAGAGATGAGCCTGGCAGATTATCTGTATTATCCCCATGCCATGATTGCCATCAGTGATG
GTGTGAAAGCGCTGATCGAGCAGGCGTTAGTCGACCAACCGCAACGTAAGATGGTGCTGCGTGCCTATCATCTTGAAGCG
GCACTGGCGATAGTGGACACCATGCCATTGATCATTACCGTCCCCGCCGATTTAGCCTACTTGGTCGCTGAGCGTTACGA
TTTGGTGGTGAAAGCGTTGCCGTTTCAGTTTACCCCGTTTGATTACTCGATGATTTGGCATCCGCGATGTGAACATTCTC
CGGCTCAAGAATGGTTGCGCTCCGTCGTGCGTGAAGAGTGCAGTCGGCTGATTGCCAAACGTATTGAAGATATGGGGCTC
GATTAA

Upstream 100 bases:

>100_bases
AATTTAACGACACTTCATTCCGACACTATCCCCATTTTTCTTGGGCTTCCCCGCTGAAAGGCGGGATTTTTTTTGCCTGA
AGAGTACAATTGCCATAAAC

Downstream 100 bases:

>100_bases
CGCAAGCGGGCGAAAGAACAGCAAAAAGCCGAGTGTGACTCGGCTTTTTTTCGCTATTTGTACGGCAAGATCTACAGCTT
GATGACCACGCGACCGGTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MGVDRSFNVELEEIYRRDLNLLVALRVLIEESSVSKAAVRLNLSQSAMSRVLGRLRDLLGDPLFTREGQHLLPTEKALEI
DRALGEPLESLRQLLSPSEFDPHLCTQTFTIATTDYAMQTILPFALPRIYQEAPNVSFHFLPLQHDRLADQLTYEGADLA
ICRPTGPVEPLRSEVLGRVGVLCLLSKQHPLAGKEMSLADYLYYPHAMIAISDGVKALIEQALVDQPQRKMVLRAYHLEA
ALAIVDTMPLIITVPADLAYLVAERYDLVVKALPFQFTPFDYSMIWHPRCEHSPAQEWLRSVVREECSRLIAKRIEDMGL
D

Sequences:

>Translated_321_residues
MGVDRSFNVELEEIYRRDLNLLVALRVLIEESSVSKAAVRLNLSQSAMSRVLGRLRDLLGDPLFTREGQHLLPTEKALEI
DRALGEPLESLRQLLSPSEFDPHLCTQTFTIATTDYAMQTILPFALPRIYQEAPNVSFHFLPLQHDRLADQLTYEGADLA
ICRPTGPVEPLRSEVLGRVGVLCLLSKQHPLAGKEMSLADYLYYPHAMIAISDGVKALIEQALVDQPQRKMVLRAYHLEA
ALAIVDTMPLIITVPADLAYLVAERYDLVVKALPFQFTPFDYSMIWHPRCEHSPAQEWLRSVVREECSRLIAKRIEDMGL
D
>Mature_320_residues
GVDRSFNVELEEIYRRDLNLLVALRVLIEESSVSKAAVRLNLSQSAMSRVLGRLRDLLGDPLFTREGQHLLPTEKALEID
RALGEPLESLRQLLSPSEFDPHLCTQTFTIATTDYAMQTILPFALPRIYQEAPNVSFHFLPLQHDRLADQLTYEGADLAI
CRPTGPVEPLRSEVLGRVGVLCLLSKQHPLAGKEMSLADYLYYPHAMIAISDGVKALIEQALVDQPQRKMVLRAYHLEAA
LAIVDTMPLIITVPADLAYLVAERYDLVVKALPFQFTPFDYSMIWHPRCEHSPAQEWLRSVVREECSRLIAKRIEDMGLD

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=294, Percent_Identity=24.1496598639456, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790147, Length=304, Percent_Identity=27.3026315789474, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081766, Length=301, Percent_Identity=22.9235880398671, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36302; Mature: 36170

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVDRSFNVELEEIYRRDLNLLVALRVLIEESSVSKAAVRLNLSQSAMSRVLGRLRDLLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCHHHHHHHHHHHHHHHC
DPLFTREGQHLLPTEKALEIDRALGEPLESLRQLLSPSEFDPHLCTQTFTIATTDYAMQT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEHHHHHHH
ILPFALPRIYQEAPNVSFHFLPLQHDRLADQLTYEGADLAICRPTGPVEPLRSEVLGRVG
HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH
VLCLLSKQHPLAGKEMSLADYLYYPHAMIAISDGVKALIEQALVDQPQRKMVLRAYHLEA
HHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALAIVDTMPLIITVPADLAYLVAERYDLVVKALPFQFTPFDYSMIWHPRCEHSPAQEWLR
HHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCHHHHHHH
SVVREECSRLIAKRIEDMGLD
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GVDRSFNVELEEIYRRDLNLLVALRVLIEESSVSKAAVRLNLSQSAMSRVLGRLRDLLG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCHHHHHHHHHHHHHHHC
DPLFTREGQHLLPTEKALEIDRALGEPLESLRQLLSPSEFDPHLCTQTFTIATTDYAMQT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCEEEEEEHHHHHHH
ILPFALPRIYQEAPNVSFHFLPLQHDRLADQLTYEGADLAICRPTGPVEPLRSEVLGRVG
HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH
VLCLLSKQHPLAGKEMSLADYLYYPHAMIAISDGVKALIEQALVDQPQRKMVLRAYHLEA
HHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
ALAIVDTMPLIITVPADLAYLVAERYDLVVKALPFQFTPFDYSMIWHPRCEHSPAQEWLR
HHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCHHHHHHH
SVVREECSRLIAKRIEDMGLD
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8419293; 7934929 [H]