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The map label for this gene is yihI

Identifier: 27364344

GI number: 27364344

Start: 908603

End: 909148

Strand: Reverse

Name: yihI

Synonym: VV1_0896

Alternate gene names: 27364344

Gene position: 909148-908603 (Counterclockwise)

Preceding gene: 27364345

Following gene: 27364343

Centisome position: 27.7

GC content: 47.8

Gene sequence:

>546_bases
ATGAGTCGTAAGAAAAAATCGAGAAAGCCGGGTGCCGCTGGCGCCCCGGAATTTATGGTTACCCGTAATCGTTCAGAGTC
AGATGTTGCTGGTCGTTTACGCAAGAAAGATAAAAAACGTAAAGGCCTAAAAGCGGGCGGTCGCAATTCGGAAGAAGGTG
CGCAGCAAAAACACGGCTCTTCGCAGGTTCGTGATCCGCGTTTAGGCAGCAAAAAGAAAATTCCATTGATTGTTGAGCCA
GCGAAAAAGCTGACGAAACAAGAGCGTCGTCTGTCTGCAGAACAAGAGCTCGAGATGCTCGAAAATGATGCGAAACTGAA
CGTGTTGCTTGACCGCATCGAATCAGGTGAAAACCTAGGCCGTGGTCTACAGCAATACGTGGATGAAAAACTGGATCGCA
TCGAGCAGTTGATGAGCCAGCTTGGTCTGCTAGAGCCAGAAGCGGAAGAAGAGTTTGAAGAAGAAGCACCAGTGCGCAAA
TCACGCTCTGATGATGATCTGCTGGCGGATTTTGAAGACTTTGATATGGATGATTACAAAGGATAA

Upstream 100 bases:

>100_bases
TCTTTTTTAGCCAAGCAACGTTTCAGTATCTGGCAGAGCGAGATAAGCTCGAACTTGAATTTATTGGCAAAGATGTAATT
TTACTGAGGAAGACCCAGTA

Downstream 100 bases:

>100_bases
GCGAACGGATGAGTGTAACCCTACTGGCCATTCTTGGTGGCGCAATCATTCTTGGTTTAGCGTCGTATGCTGGTTACCTT
CTACTCCAGCTTAAAAAGCA

Product: Der GTPase activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MSRKKKSRKPGAAGAPEFMVTRNRSESDVAGRLRKKDKKRKGLKAGGRNSEEGAQQKHGSSQVRDPRLGSKKKIPLIVEP
AKKLTKQERRLSAEQELEMLENDAKLNVLLDRIESGENLGRGLQQYVDEKLDRIEQLMSQLGLLEPEAEEEFEEEAPVRK
SRSDDDLLADFEDFDMDDYKG

Sequences:

>Translated_181_residues
MSRKKKSRKPGAAGAPEFMVTRNRSESDVAGRLRKKDKKRKGLKAGGRNSEEGAQQKHGSSQVRDPRLGSKKKIPLIVEP
AKKLTKQERRLSAEQELEMLENDAKLNVLLDRIESGENLGRGLQQYVDEKLDRIEQLMSQLGLLEPEAEEEFEEEAPVRK
SRSDDDLLADFEDFDMDDYKG
>Mature_180_residues
SRKKKSRKPGAAGAPEFMVTRNRSESDVAGRLRKKDKKRKGLKAGGRNSEEGAQQKHGSSQVRDPRLGSKKKIPLIVEPA
KKLTKQERRLSAEQELEMLENDAKLNVLLDRIESGENLGRGLQQYVDEKLDRIEQLMSQLGLLEPEAEEEFEEEAPVRKS
RSDDDLLADFEDFDMDDYKG

Specific function: A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis

COG id: COG3078

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YihI family

Homologues:

Organism=Escherichia coli, GI1790297, Length=108, Percent_Identity=45.3703703703704, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YIHI_VIBVU (Q8DDR1)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759872.1
- GeneID:   1177835
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0896
- HOGENOM:   HBG303443
- OMA:   AQKKDPR
- ProtClustDB:   PRK05244
- BioCyc:   VVUL216895:VV1_0896-MONOMER
- HAMAP:   MF_01058
- InterPro:   IPR007336

Pfam domain/function: PF04220 DUF414

EC number: NA

Molecular weight: Translated: 20568; Mature: 20437

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKKKSRKPGAAGAPEFMVTRNRSESDVAGRLRKKDKKRKGLKAGGRNSEEGAQQKHGS
CCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
SQVRDPRLGSKKKIPLIVEPAKKLTKQERRLSAEQELEMLENDAKLNVLLDRIESGENLG
CCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHH
RGLQQYVDEKLDRIEQLMSQLGLLEPEAEEEFEEEAPVRKSRSDDDLLADFEDFDMDDYK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCCC
G
C
>Mature Secondary Structure 
SRKKKSRKPGAAGAPEFMVTRNRSESDVAGRLRKKDKKRKGLKAGGRNSEEGAQQKHGS
CCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
SQVRDPRLGSKKKIPLIVEPAKKLTKQERRLSAEQELEMLENDAKLNVLLDRIESGENLG
CCCCCCCCCCCCCCCEEECHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHCCHHHH
RGLQQYVDEKLDRIEQLMSQLGLLEPEAEEEFEEEAPVRKSRSDDDLLADFEDFDMDDYK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA