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The map label for this gene is yhcM [H]

Identifier: 27364061

GI number: 27364061

Start: 612888

End: 613991

Strand: Reverse

Name: yhcM [H]

Synonym: VV1_0600

Alternate gene names: 27364061

Gene position: 613991-612888 (Counterclockwise)

Preceding gene: 27364065

Following gene: 27364060

Centisome position: 18.71

GC content: 44.84

Gene sequence:

>1104_bases
ATGAGCCCATTAGAAAAATACGAACACGACCTCGCGCATAACGGATTCCAGAAAGACGCTGCTCAGTACAATGCAGTGCG
AGCACTAGATAGGCTTTTTCATCAATATCTCGATTATTGTGCCCAGCCTCAACCGCAACAAACGCGTTGGCAAAAATTAT
TAGGCAAACAGCCGCCAGCCAAATTACCACCTCAAGGACTCTATTTTTGGGGTGGTGTTGGGCGTGGAAAAACGTATCTC
ATGGATACTTTTTTTGAGGCTTTGCCAACTCAACGCAAAATGCGCGTCCATTTTCATCGCTTTATGTATCGAGTTCACGA
TGAACTGAAACGGTTAGGTGATGTAGAAAATCCACTGGAAAAAGTGGCTGATGTGTTTAAGAAAGAGGCGGATATTGTCT
GCTTTGATGAGTTTTTTGTTTCGGATATTACCGATGCGATGATTCTCGGCACGCTGATGCAGGCGATGTTTAGGCGTCAA
ATGATACTGGTGGCGACGTCGAACATTGTACCTCAAGAGCTATATCGTAATGGATTACAGAGAGCGCGCTTTTTGCCTGC
TATCGCTTTGATTGAGCAACACTGTGAAGTGCTCAATGTGGATAGTGGTATTGACTATCGTCTACGAACGTTAGAGCAAG
CAGAGATCTATCATTATCCATTGGATGAGCAGGCAAATCTCAATCTAAATCTCTACTATCAGCAGTTAGTCGGAGAGGGC
AAAGCCAAATTACACAGTGTTGACATCAATCATCGCCAAATAGCCGTTATAGAGGCCAGTGATGGGGTACTGCATGCTAC
GTTCGCCCAGCTATGCCAAACCGCACGCAGTCAAAATGACTATATTGAACTGTCCAAAATCTATCACACGGTGTTGTTGG
CGGATGTGCCACAAATGGACAATAAGATCGATGATGCCGCGCGGCGATTTATCGCCCTCGTGGATGAGTTTTACGAGCGA
CACGTTAAATTGATTATTTCGGCGGAAGTCGCACTAGAACAACTCTATCTGCAAGGGCAATTGGAGTTTGAGTTTAAGCG
TTGTCAATCTCGTTTAGTGGAAATGCAAAGTCATGAGTACTTAGCGAGAGAACATCTGGCTTAG

Upstream 100 bases:

>100_bases
ACCATGTTACTATGGGAGCAGTAGTCAATAAAGCAAAATAGCAACGACACAATCTCAAGTTTGATAACGGGATTTTATGC
CCTGTTTTGGTATGAGAACA

Downstream 100 bases:

>100_bases
ATTGTTTATTGGGAGAAAGACGTGACGAAAAAATTAGTGATTGAGTGCAAAAAAAGGTGATTTTTTCTTCGCTCTTCTCT
ATAATCCTGCGACCCACCGT

Product: putative ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGGVGRGKTYL
MDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVADVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQ
MILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYYQQLVGEG
KAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIALVDEFYER
HVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA

Sequences:

>Translated_367_residues
MSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGGVGRGKTYL
MDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVADVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQ
MILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYYQQLVGEG
KAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIALVDEFYER
HVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA
>Mature_366_residues
SPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGGVGRGKTYLM
DTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVADVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQM
ILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYYQQLVGEGK
AKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIALVDEFYERH
VKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=32.0197044334975, Blast_Score=215, Evalue=4e-56,
Organism=Escherichia coli, GI1789627, Length=372, Percent_Identity=53.763440860215, Blast_Score=398, Evalue=1e-112,
Organism=Caenorhabditis elegans, GI17505769, Length=351, Percent_Identity=33.3333333333333, Blast_Score=214, Evalue=5e-56,
Organism=Saccharomyces cerevisiae, GI6320783, Length=318, Percent_Identity=31.1320754716981, Blast_Score=152, Evalue=6e-38,
Organism=Drosophila melanogaster, GI20129913, Length=424, Percent_Identity=33.4905660377358, Blast_Score=216, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42766; Mature: 42634

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPA
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
KLPPQGLYFWGGVGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLE
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KVADVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQMILVATSNIVPQELYRNGLQ
HHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHH
RARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYYQQLVGEG
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHCCC
KAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMD
CHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHC
NKIDDAARRFIALVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LAREHLA
HHHHCCC
>Mature Secondary Structure 
SPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPA
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCC
KLPPQGLYFWGGVGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLE
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KVADVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQMILVATSNIVPQELYRNGLQ
HHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHH
RARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYYQQLVGEG
HHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCCCCCEEHHHHHHCCC
KAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMD
CHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHC
NKIDDAARRFIALVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LAREHLA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]