Click here to switch to the map view.

The map label for this gene is rraA [C]

Identifier: 27364009

GI number: 27364009

Start: 548859

End: 549341

Strand: Reverse

Name: rraA [C]

Synonym: VV1_0547

Alternate gene names: 27364009

Gene position: 549341-548859 (Counterclockwise)

Preceding gene: 27364011

Following gene: 27364007

Centisome position: 16.74

GC content: 43.69

Gene sequence:

>483_bases
ATGAAGGACATTACCCCGGATATCTGTGATCAACATGAAGACAAAGTCACTTTACTCAATTTGCCATTACAGAATTTTGG
TCAGAAAGCGGCATTCTTCGGAGAGATTGTGACCGTTCGCTGTTATCACGATAACTCGAAAGTGCGAGATGTTTTGAGTG
AAAATGGTAAAGGTAAAGTGTTGGTTGTGGATGGGCATGGTTCCTGCCAAAAAGCATTACTTGGCGATCAATTAGCGATA
TTAGCCATTGAAAATGATTGGGAAGGGGTGATTGTGTTTGGTGCCGTGCGCGACGTCGCCCAGATGTCACAGATGGAACT
GGGGATTAAAGCATTGGGTACGTCACCATTCAAAACGGAAAAACGAGGGGCCGGTGAAGTCAATGTTACCTTAACCATGC
ACAACCAAATGGTGCAGCCAAAGGATTACATCTACGCCGATTGGAATGGAATTCTTATTTCCAAAGAGTTGCTTCAATTC
TAA

Upstream 100 bases:

>100_bases
AGGAAAGAATCACTGGGGCCGTTTGACCAGCGCATCAGATAAGAAATTTTGAATTCGAGCCGCATGTTTGATGTGGCAAA
AATTTTCTCAAGGAGGATAT

Downstream 100 bases:

>100_bases
AAGCGGAAACCTAAACCAAACTCAATACCTTGTTGCCACTCTTGCAGGTCGAGAGTGGCATGCAAATCCAGTTGTTCGCT
AATTTTGACTCGGCTTGTCA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQKALLGDQLAI
LAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF

Sequences:

>Translated_160_residues
MKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQKALLGDQLAI
LAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF
>Mature_160_residues
MKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQKALLGDQLAI
LAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=39.2405063291139, Blast_Score=137, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_VIBVU (Q8DEP0)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759537.1
- ProteinModelPortal:   Q8DEP0
- SMR:   Q8DEP0
- GeneID:   1177499
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0547
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- ProtClustDB:   PRK12487
- BioCyc:   VVUL216895:VV1_0547-MONOMER
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17735; Mature: 17735

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKV
CCCCCCCHHCCCCCCEEEEECCHHHCCCHHHEEEEEEEEEEECCCHHHHHHHHCCCCCEE
LVVDGHGSCQKALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTE
EEEECCCCHHHHHCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHCCHHCCCCCCCCCC
KRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF
CCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEHHHHCC
>Mature Secondary Structure
MKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKV
CCCCCCCHHCCCCCCEEEEECCHHHCCCHHHEEEEEEEEEEECCCHHHHHHHHCCCCCEE
LVVDGHGSCQKALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTE
EEEECCCCHHHHHCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHCCHHCCCCCCCCCC
KRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF
CCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA