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The map label for this gene is yafA [C]

Identifier: 27363802

GI number: 27363802

Start: 315960

End: 317207

Strand: Reverse

Name: yafA [C]

Synonym: VV1_0328

Alternate gene names: 27363802

Gene position: 317207-315960 (Counterclockwise)

Preceding gene: 27363803

Following gene: 326423690

Centisome position: 9.67

GC content: 46.15

Gene sequence:

>1248_bases
ATGTCAGAAGAAGTCAGCAAAAACCTGTCAGAAACGCTATTTGTCAAACATAAGCAAGCCAAAGAAACCTCGGCATTGAC
TCAATACATGCCGACCAGCCAATCCTTACTTGATGAAATTAAAGAGAAGAATGGTTTTTCTTGGTATCGCAACCTTCGTC
GCTTGCAATGGGTGTGGCAAGGTGTCGATCCTATTGAGCAAGAACAAGTATTGGCTCGTATTGCCTCTTCCAAACATTCA
CGCACTGATGAGCAATGGCTCGATACGGTGATGGGATATCACAGTGGTAACTGGGCTTATGAATGGACGAGGCTCGGTAT
GGAGCATCAAAAGCGTGCCGGTGAGATGACGAATGAAGCAGCATCGGAAGCGCTCTTCTCCGCATCCTTGTGTTACAGCA
TCGCAGGTTACCCACACCTCAAGAGCGATAATTTGGCCATTCAAGCACAAGTTTTGGCCAACAGCGCTTATCTTGAAGCC
GCGAAAAAAAGCAAATACATCATTAAGCAGCTCGAGATCCCATTTGAGAAAGGGAAGATCACCGCGCACTTGCATCTGAC
CAATACGGATAAACCGCATCCTGTGGTTATTGTGAGTGCGGGATTAGACAGTCTGCAAACCGACATGTGGCGTCTATTTC
GAGATCACCTTGCCAAGCACGATATTGCCATGTTGACAGTAGACATGCCATCGGTGGGGTACAGCTCAAAATACCCATTA
ACGGAGGATTACAGTCGCCTTCACCAAGCGGTGTTGAACGAGCTTTTCTCTATTCCTTATGTCGATCATCATCGAGTGGG
TTTGATCGGCTTTCGTTTTGGCGGTAACGCCATGGTGAGGCTCTCGTTCCTTGAGCAAGAAAAGATCAAAGCGTGCGTTA
TCTTAGGCGCACCTATTCATGATATTTTTGCCTCCCCACAGAAATTGCAGCAAATGCCGAAGATGTATCTCGATGTCTTA
GCCTCGCGTTTAGGTAAGAGTGTGGTAGATATTTACAGCTTATCGGGGCAAATGGCCGCGTGGTCACTGAAAGTACAAGG
CTTTTTGAGCAGTCGTAAAACCAAGGTGCCTATCTTGGCGATGAGCTTAGAAGGGGATCCGGTCTCGCCATATTCGGATA
ATCAGATGGTTGCTTTTTTTAGCACTTATGGAAAAGCGAAGAAAATCAGTTCCAAAACAATTACACAAGGATATGAGCAA
TCCCTCGATTTAGCGATAAAGTGGCTGGAAGATGAACTCTTAAGGTGA

Upstream 100 bases:

>100_bases
ATTTGGCTTTTAGGCGCACACACTCTTGCATGGAAAGAGTATTAAGCCACTGAGCCGTATTTGTTTTTTAGTCTTTTGGA
ATGTCACTCTGAGCCCGAAT

Downstream 100 bases:

>100_bases
CAAATCTCCTAATTTAGTCAAGAGTGATATATGAGCCTGAAAATTTAAGCTCATGATAAATAAAAATTATTGTCATTCTT
AACATTGAAGAAAATGGAGA

Product: fermentation/respiration switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHS
RTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEA
AKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL
TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVL
ASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQ
SLDLAIKWLEDELLR

Sequences:

>Translated_415_residues
MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHS
RTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEA
AKKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL
TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVL
ASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQ
SLDLAIKWLEDELLR
>Mature_414_residues
SEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQGVDPIEQEQVLARIASSKHSR
TDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEAASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAA
KKSKYIIKQLEIPFEKGKITAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPLT
EDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLA
SRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQS
LDLAIKWLEDELLR

Specific function: Unknown

COG id: COG1073

COG function: function code R; Hydrolases of the alpha/beta superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0255 family

Homologues:

Organism=Escherichia coli, GI1786434, Length=414, Percent_Identity=42.512077294686, Blast_Score=320, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y328_VIBVU (Q8DF91)

Other databases:

- EMBL:   AE016795
- RefSeq:   NP_759330.1
- ProteinModelPortal:   Q8DF91
- GeneID:   1177289
- GenomeReviews:   AE016795_GR
- KEGG:   vvu:VV1_0328
- HOGENOM:   HBG297988
- OMA:   GANIAVR
- ProtClustDB:   PRK05077
- BioCyc:   VVUL216895:VV1_0328-MONOMER
- HAMAP:   MF_01063
- InterPro:   IPR010520

Pfam domain/function: PF06500 DUF1100

EC number: NA

Molecular weight: Translated: 47013; Mature: 46882

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEA
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHCHHHHHHHHHHHHHH
ASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKI
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
TAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL
EEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIH
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHCCCEEEEECCCHH
DIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILA
HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEE
MSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR
EEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEEVSKNLSETLFVKHKQAKETSALTQYMPTSQSLLDEIKEKNGFSWYRNLRRLQWVWQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GVDPIEQEQVLARIASSKHSRTDEQWLDTVMGYHSGNWAYEWTRLGMEHQKRAGEMTNEA
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEHHHHHCHHHHHHHHHHHHHH
ASEALFSASLCYSIAGYPHLKSDNLAIQAQVLANSAYLEAAKKSKYIIKQLEIPFEKGKI
HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
TAHLHLTNTDKPHPVVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYSSKYPL
EEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCC
TEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIH
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEEEEHHHHHCCCEEEEECCCHH
DIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILA
HHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEEEHHHHHCCCCCCCEEE
MSLEGDPVSPYSDNQMVAFFSTYGKAKKISSKTITQGYEQSLDLAIKWLEDELLR
EEECCCCCCCCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA