Click here to switch to the map view.

The map label for this gene is flgC [H]

Identifier: 27363707

GI number: 27363707

Start: 218412

End: 218828

Strand: Reverse

Name: flgC [H]

Synonym: VV1_0225

Alternate gene names: 27363707

Gene position: 218828-218412 (Counterclockwise)

Preceding gene: 27363708

Following gene: 27363706

Centisome position: 6.67

GC content: 45.8

Gene sequence:

>417_bases
ATGAGCTTATTTAATGTGTTCAATGTGACTGGTTCTGCAATGAGTGCTGAATCTGTTCGTCTAAATACGACCTCAAGTAA
CCTAGCCAACGCGGATAGTGTCAGTAGTTCTGCTAAAGATACTTACAAAGCTCGTCACGCGGTGTTTGGTGCTGAGTTAA
GTAATGCGATGTACAACCGCGGGGACACGGTTCCTGTGAAAGTACTTGGCATTGTGGAAAGCGATAAACCGCTGAGCGCG
GAATACAACCCAGAGCACCCACTCGCAAACGATGAAGGCTATATCTACAAGCCTAATGTCAATGTGATGGAAGAAATGGC
CAACATGATTTCTGCTTCACGAGCGTACCAAACAAACGTTCAAGTTGCAGATGCAAGTAAACAAATGCTGCTGCGTACGC
TGCAGATGGGTCAATAG

Upstream 100 bases:

>100_bases
AATTTGTTTATGCAGAATCAAATTCGTCATCAAGCGTCTCTCGATTTTTTGGGCGGGAAATTTAAGAACTTAACGAAAGC
GATCAAAGGGGAATAATTAG

Downstream 100 bases:

>100_bases
GGATAAGGAGGTAGCGTATGGCCGGAATCAATAACGTTGGTCAAAGCGGCTTGTCCTATATCGACCAGCTTAAGAGTTTG
CAAGAGAGCAAGAAGCCAAC

Product: flagellar basal body rod protein FlgC

Products: NA

Alternate protein names: Putative proximal rod protein [H]

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNRGDTVPVKVLGIVESDKPLSA
EYNPEHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADASKQMLLRTLQMGQ

Sequences:

>Translated_138_residues
MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNRGDTVPVKVLGIVESDKPLSA
EYNPEHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADASKQMLLRTLQMGQ
>Mature_137_residues
SLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNRGDTVPVKVLGIVESDKPLSAE
YNPEHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNVQVADASKQMLLRTLQMGQ

Specific function: Unknown

COG id: COG1558

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family [H]

Homologues:

Organism=Escherichia coli, GI1787314, Length=138, Percent_Identity=44.9275362318841, Blast_Score=122, Evalue=7e-30,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR006299 [H]

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod [H]

EC number: NA

Molecular weight: Translated: 14986; Mature: 14855

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNR
CCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GDTVPVKVLGIVESDKPLSAEYNPEHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNV
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCE
QVADASKQMLLRTLQMGQ
EEECHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLFNVFNVTGSAMSAESVRLNTTSSNLANADSVSSSAKDTYKARHAVFGAELSNAMYNR
CCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
GDTVPVKVLGIVESDKPLSAEYNPEHPLANDEGYIYKPNVNVMEEMANMISASRAYQTNV
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCE
QVADASKQMLLRTLQMGQ
EEECHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]