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The map label for this gene is xerC [H]

Identifier: 27363563

GI number: 27363563

Start: 76680

End: 77384

Strand: Reverse

Name: xerC [H]

Synonym: VV1_0078

Alternate gene names: 27363563

Gene position: 77384-76680 (Counterclockwise)

Preceding gene: 27363564

Following gene: 27363562

Centisome position: 2.36

GC content: 51.06

Gene sequence:

>705_bases
ATGACAACCCTAATTTCACACTCTCAAAACCAATCATCGACTCAGTTCTTTCTTCACTACTTTACTGAGCAGGAAGAGAA
GCAGTTGTTTAACACGGTTAAGCAGACTTACGGCATTTATGCACAGCGTGATTATTACTGGATGCTGCTGATGCGCGAAA
CCGCCGTTCGCCTCGGTGTGCTGGCTGGCCCCGATGCCGATAAAGCCAAGCGTTTTAACCTGCCAATGCTCGGTTTAACG
GTAGGTGAAGCGGAGCAAAGCCTTGAAGAAGGCTATCTGATTTACCGCAGTGAAAACGCCAAGAACCAGAAAAAACACCC
GATTGCTCTCAACAAATCCGCCATTCATGCGCTCAAGCAGTTGCTGAAAATTCATGTCGAAATGAGCCAAGGCATTGAGT
GGGATACCCCTCGTTTAGAGCGTCCGCTTTTTCTCAGCCGTAACCGTCAGGCGATGAGTCGCCGATCGTTTCAATCTCGC
TTTTCGACTTGGTGCCGTTTGGCCAATGTGCCGGAAGGGACACCACACTGGCTGCGCCACAGTTGGGCTAAGCGCTATTT
GGAACGCACCACATCACCGGATGCGCTTCGCCGTGTTCAGGCGGTGCTTGGTCATTCCAACATTGCGACTACCTCGGTGT
ATACCACGCCGGATCGTGAATCATTGTCGTCAGCTATGCGGGAGGCCAGCACATGTTTTCGCTAA

Upstream 100 bases:

>100_bases
GCGAACTGCAAGAAACGTTTGCCGCGGCACTGGAGCTGCTCGAGCGTTTGCGCGCATTGGTTAACGGTTAATTCAACGGC
GAAGCCAAAGGAGGTAGGCC

Downstream 100 bases:

>100_bases
CTCAGCCGCGTCTGCAGCATATCTCGGCCGAGCACATTTGCCGTGGCCATGTGGTCAGTTTTGAGGGGAATCGTCATAAC
GCGTCGATTGTCGAGTGGTG

Product: site-specific recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTTLISHSQNQSSTQFFLHYFTEQEEKQLFNTVKQTYGIYAQRDYYWMLLMRETAVRLGVLAGPDADKAKRFNLPMLGLT
VGEAEQSLEEGYLIYRSENAKNQKKHPIALNKSAIHALKQLLKIHVEMSQGIEWDTPRLERPLFLSRNRQAMSRRSFQSR
FSTWCRLANVPEGTPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREASTCFR

Sequences:

>Translated_234_residues
MTTLISHSQNQSSTQFFLHYFTEQEEKQLFNTVKQTYGIYAQRDYYWMLLMRETAVRLGVLAGPDADKAKRFNLPMLGLT
VGEAEQSLEEGYLIYRSENAKNQKKHPIALNKSAIHALKQLLKIHVEMSQGIEWDTPRLERPLFLSRNRQAMSRRSFQSR
FSTWCRLANVPEGTPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREASTCFR
>Mature_233_residues
TTLISHSQNQSSTQFFLHYFTEQEEKQLFNTVKQTYGIYAQRDYYWMLLMRETAVRLGVLAGPDADKAKRFNLPMLGLTV
GEAEQSLEEGYLIYRSENAKNQKKHPIALNKSAIHALKQLLKIHVEMSQGIEWDTPRLERPLFLSRNRQAMSRRSFQSRF
STWCRLANVPEGTPHWLRHSWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREASTCFR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 27173; Mature: 27042

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLISHSQNQSSTQFFLHYFTEQEEKQLFNTVKQTYGIYAQRDYYWMLLMRETAVRLGV
CCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEECCCHHEEHHHHHHHHHHHH
LAGPDADKAKRFNLPMLGLTVGEAEQSLEEGYLIYRSENAKNQKKHPIALNKSAIHALKQ
EECCCCHHHHHCCCCEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCCEEECHHHHHHHHH
LLKIHVEMSQGIEWDTPRLERPLFLSRNRQAMSRRSFQSRFSTWCRLANVPEGTPHWLRH
HHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREASTCFR
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTLISHSQNQSSTQFFLHYFTEQEEKQLFNTVKQTYGIYAQRDYYWMLLMRETAVRLGV
CCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCEECCCHHEEHHHHHHHHHHHH
LAGPDADKAKRFNLPMLGLTVGEAEQSLEEGYLIYRSENAKNQKKHPIALNKSAIHALKQ
EECCCCHHHHHCCCCEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCCEEECHHHHHHHHH
LLKIHVEMSQGIEWDTPRLERPLFLSRNRQAMSRRSFQSRFSTWCRLANVPEGTPHWLRH
HHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
SWAKRYLERTTSPDALRRVQAVLGHSNIATTSVYTTPDRESLSSAMREASTCFR
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA