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The map label for this gene is allB [C]

Identifier: 27363493

GI number: 27363493

Start: 2180

End: 3844

Strand: Reverse

Name: allB [C]

Synonym: VV1_0003

Alternate gene names: 27363493

Gene position: 3844-2180 (Counterclockwise)

Preceding gene: 27363494

Following gene: 27363492

Centisome position: 0.12

GC content: 43.24

Gene sequence:

>1665_bases
ATGAAAGATGACATCTTAACTGAACAGACTGGATCTCATGAGATAGACCATACAAAACGTTCAACGTTAACTAAATTAGC
CTTTGGCGCAGCAACACTTCCATTTGCTTCGGTTCTGCATGCAGCTTCCGACAAACTGGCTGTACAGAATATTTCCCTAA
TGCCTAATGAAAAAGGCCCTTTTGATATTGTTATCGAAAATGGTCGTGTGGTTGATCCTGAAACGGGCTTAGATGCGATT
CGTAATGTAGGGATCAAAGGTAAGCGTATTGCTGCTATTTCAAAAAATACCTTAAAAGGGGCCAAAGTAATTAATGCTGA
AGGTTTAGTCGTTGCTCCAGGCTTCGTTGATTTACATGCACATGGTCAACAGCTTCCTGCGGCGCGCGCTCAAGCATTTG
ATGGTGTTACCACCCAACTGGAAATGGAATCGGGTTTATTACCCATCTCTAAATTCTATGATGATACGGCAAAAGAAGGT
CGACCTCTTAACTACGGCGCATCGGTTGCTTGGACCTACGCACGAGTTATGGCAAAAGAACCAACAATGCCAGCAGCTGA
TGGTACGATTGTTTGGTTCCAAAAAGCATTTTCATACAACAATTGGCAAAATACTCTAGCAACACCAGATGAGCTAAAAC
AGATCCTCAATGATATCGAACAAGGTCTGAAAGAAGGTGGTTTAGGCATTGGGATTAACGCAGGCTATGCACCGGGTTAT
GGCCATAAAGAGTACTACGAGCTAGCGAAGCTCGCCAAACGCTATAATATGCCAACTTATACGCATGTTCGTTACTTAAA
CAGTGCAGAACCAAAATCCAGCTTTGAAGCCTATCAAGAACTCATCAGTTTATCTGCAACGACTGGTGCACACATGCACA
TTTGTCACCTTAATAGTACCTCTGTGCAAGATATTGATGATTGTGCGGACTTAGTACAATCAGCGATTGATAGAGGTTTG
AATGTAACTGCCGAAGCTTACCCTTACGGTGCCGGTTCGTCACTGATTGGCGCAGAAGTTTTCCGTGGTGATGATTGGTT
AGAGCGCTGGGGCGTACCAAGTGCAAGTTACATGGAAGCTAATGGGAAACCATTAACACAAGAAAAGATCACTGAGCTGC
AAGCAAATGACCCAGGCAAAGTGGTAGTAATGCATTTCTTAAAACCTGATGATAATCCATCTGATCGTCAAAAAATGGAT
CGTTCAGTTCTGTTTCCTGGTGCTGCTATTGCTTCAGATGCTATGCCTTGGATGGACTCAAAAGGGAAAGTCATCGAAGG
TGATATTTGGCCACTCCCTAGTGATGCCATCGCTCACCCAAGATCACTGGCTTGCTTTACCCGTTTCATTAGTAAATATG
TTAACGAATACAAAGCGGTTACGCTTGTCGAGGCAATGGAGCGTTGTAGCTTAAACGCTTGTCGCATTATCGAAAACAGC
GTCCCACAAATGAAAAACAAAGGCCGTGTTCAAGTAGGTAAAGATGCCGATTTAGTATTATTTAAACTTGAAGATATCAA
AGTGCTTGCGACTTTCGAGGCCCCTAATGCACTTTCTGAAGGTATGCATCATGTCATTGTTAACGGTACACCCGTCATTG
AAAATGGTCAATTACAGTTAGATGCCAATCCGGGTGAGCCCATTCGCAACCCTGTTATTGCATAA

Upstream 100 bases:

>100_bases
GCGTTGGTAAATAATTTCTTGATTAAGTTAACAGAACTCATATACACCACGAAATACACTATAATATCAATCAACTTTAG
GTAATGAGATAAGGGAAAAA

Downstream 100 bases:

>100_bases
TTAACTCTAAATATAATTAAGCTCGGCGCAAGTCGAGCTTTTTCATGAAATGATATAGAGAAATGTCGATGAGTAAAAAG
CCAATTCCAGTCACTATCTT

Product: D-glutamate deacylase

Products: NA

Alternate protein names: N-acyl-D-glutamate amidohydrolase [H]

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MKDDILTEQTGSHEIDHTKRSTLTKLAFGAATLPFASVLHAASDKLAVQNISLMPNEKGPFDIVIENGRVVDPETGLDAI
RNVGIKGKRIAAISKNTLKGAKVINAEGLVVAPGFVDLHAHGQQLPAARAQAFDGVTTQLEMESGLLPISKFYDDTAKEG
RPLNYGASVAWTYARVMAKEPTMPAADGTIVWFQKAFSYNNWQNTLATPDELKQILNDIEQGLKEGGLGIGINAGYAPGY
GHKEYYELAKLAKRYNMPTYTHVRYLNSAEPKSSFEAYQELISLSATTGAHMHICHLNSTSVQDIDDCADLVQSAIDRGL
NVTAEAYPYGAGSSLIGAEVFRGDDWLERWGVPSASYMEANGKPLTQEKITELQANDPGKVVVMHFLKPDDNPSDRQKMD
RSVLFPGAAIASDAMPWMDSKGKVIEGDIWPLPSDAIAHPRSLACFTRFISKYVNEYKAVTLVEAMERCSLNACRIIENS
VPQMKNKGRVQVGKDADLVLFKLEDIKVLATFEAPNALSEGMHHVIVNGTPVIENGQLQLDANPGEPIRNPVIA

Sequences:

>Translated_554_residues
MKDDILTEQTGSHEIDHTKRSTLTKLAFGAATLPFASVLHAASDKLAVQNISLMPNEKGPFDIVIENGRVVDPETGLDAI
RNVGIKGKRIAAISKNTLKGAKVINAEGLVVAPGFVDLHAHGQQLPAARAQAFDGVTTQLEMESGLLPISKFYDDTAKEG
RPLNYGASVAWTYARVMAKEPTMPAADGTIVWFQKAFSYNNWQNTLATPDELKQILNDIEQGLKEGGLGIGINAGYAPGY
GHKEYYELAKLAKRYNMPTYTHVRYLNSAEPKSSFEAYQELISLSATTGAHMHICHLNSTSVQDIDDCADLVQSAIDRGL
NVTAEAYPYGAGSSLIGAEVFRGDDWLERWGVPSASYMEANGKPLTQEKITELQANDPGKVVVMHFLKPDDNPSDRQKMD
RSVLFPGAAIASDAMPWMDSKGKVIEGDIWPLPSDAIAHPRSLACFTRFISKYVNEYKAVTLVEAMERCSLNACRIIENS
VPQMKNKGRVQVGKDADLVLFKLEDIKVLATFEAPNALSEGMHHVIVNGTPVIENGQLQLDANPGEPIRNPVIA
>Mature_554_residues
MKDDILTEQTGSHEIDHTKRSTLTKLAFGAATLPFASVLHAASDKLAVQNISLMPNEKGPFDIVIENGRVVDPETGLDAI
RNVGIKGKRIAAISKNTLKGAKVINAEGLVVAPGFVDLHAHGQQLPAARAQAFDGVTTQLEMESGLLPISKFYDDTAKEG
RPLNYGASVAWTYARVMAKEPTMPAADGTIVWFQKAFSYNNWQNTLATPDELKQILNDIEQGLKEGGLGIGINAGYAPGY
GHKEYYELAKLAKRYNMPTYTHVRYLNSAEPKSSFEAYQELISLSATTGAHMHICHLNSTSVQDIDDCADLVQSAIDRGL
NVTAEAYPYGAGSSLIGAEVFRGDDWLERWGVPSASYMEANGKPLTQEKITELQANDPGKVVVMHFLKPDDNPSDRQKMD
RSVLFPGAAIASDAMPWMDSKGKVIEGDIWPLPSDAIAHPRSLACFTRFISKYVNEYKAVTLVEAMERCSLNACRIIENS
VPQMKNKGRVQVGKDADLVLFKLEDIKVLATFEAPNALSEGMHHVIVNGTPVIENGQLQLDANPGEPIRNPVIA

Specific function: Involved In The Anaerobic Utilization Of Allantoin. [C]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.82 [H]

Molecular weight: Translated: 60406; Mature: 60406

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDDILTEQTGSHEIDHTKRSTLTKLAFGAATLPFASVLHAASDKLAVQNISLMPNEKGP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHEEEEEEECCCCCCC
FDIVIENGRVVDPETGLDAIRNVGIKGKRIAAISKNTLKGAKVINAEGLVVAPGFVDLHA
EEEEECCCEEECCCCCHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCEEECCCEEEECC
HGQQLPAARAQAFDGVTTQLEMESGLLPISKFYDDTAKEGRPLNYGASVAWTYARVMAKE
CCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHCC
PTMPAADGTIVWFQKAFSYNNWQNTLATPDELKQILNDIEQGLKEGGLGIGINAGYAPGY
CCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
GHKEYYELAKLAKRYNMPTYTHVRYLNSAEPKSSFEAYQELISLSATTGAHMHICHLNST
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
SVQDIDDCADLVQSAIDRGLNVTAEAYPYGAGSSLIGAEVFRGDDWLERWGVPSASYMEA
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCEEEC
NGKPLTQEKITELQANDPGKVVVMHFLKPDDNPSDRQKMDRSVLFPGAAIASDAMPWMDS
CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHEECCCHHHHHCCCCCCCC
KGKVIEGDIWPLPSDAIAHPRSLACFTRFISKYVNEYKAVTLVEAMERCSLNACRIIENS
CCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VPQMKNKGRVQVGKDADLVLFKLEDIKVLATFEAPNALSEGMHHVIVNGTPVIENGQLQL
CHHHHCCCCEEECCCCCEEEEEECCEEEEEEECCCCHHHCCCEEEEECCCEEEECCEEEE
DANPGEPIRNPVIA
ECCCCCCCCCCCCC
>Mature Secondary Structure
MKDDILTEQTGSHEIDHTKRSTLTKLAFGAATLPFASVLHAASDKLAVQNISLMPNEKGP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHEEEEEEECCCCCCC
FDIVIENGRVVDPETGLDAIRNVGIKGKRIAAISKNTLKGAKVINAEGLVVAPGFVDLHA
EEEEECCCEEECCCCCHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCEEECCCEEEECC
HGQQLPAARAQAFDGVTTQLEMESGLLPISKFYDDTAKEGRPLNYGASVAWTYARVMAKE
CCCCCCHHHHHHHCCCCEEEECCCCCCCHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHCC
PTMPAADGTIVWFQKAFSYNNWQNTLATPDELKQILNDIEQGLKEGGLGIGINAGYAPGY
CCCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
GHKEYYELAKLAKRYNMPTYTHVRYLNSAEPKSSFEAYQELISLSATTGAHMHICHLNST
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
SVQDIDDCADLVQSAIDRGLNVTAEAYPYGAGSSLIGAEVFRGDDWLERWGVPSASYMEA
CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCCHHHHHCCCCCCCEEEC
NGKPLTQEKITELQANDPGKVVVMHFLKPDDNPSDRQKMDRSVLFPGAAIASDAMPWMDS
CCCCCCHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHEECCCHHHHHCCCCCCCC
KGKVIEGDIWPLPSDAIAHPRSLACFTRFISKYVNEYKAVTLVEAMERCSLNACRIIENS
CCCEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VPQMKNKGRVQVGKDADLVLFKLEDIKVLATFEAPNALSEGMHHVIVNGTPVIENGQLQL
CHHHHCCCCEEECCCCCEEEEEECCEEEEEEECCCCHHHCCCEEEEECCCEEEECCEEEE
DANPGEPIRNPVIA
ECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8537313 [H]