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The map label for this gene is yxdM

Identifier: 255767848

GI number: 255767848

Start: 4068550

End: 4070418

Strand: Reverse

Name: yxdM

Synonym: BSU39630

Alternate gene names: 255767848

Gene position: 4070418-4068550 (Counterclockwise)

Preceding gene: 255767849

Following gene: 16081013

Centisome position: 96.56

GC content: 44.09

Gene sequence:

>1869_bases
ATGACCTTTCTTCAGTTCGCTTATAAAAACGTCACGAGAAACAAAAGGGCCTATCTTGCATTCTTTTTAAGCAGCGCCTT
TTCCGTTTTGATTTTCTTTACCTTTGCGATGTTCCTGTTTCATCCGGCATTAAAGGAAGGCTACCTGAATAACATCGCCA
AAAAAGGCTTAACCGCCGCGGAATGGATGATCTTTGTTTTTTCTTTCTTATTTGTTCTGTATTCGGTTAATGCATTTTTG
AAATCGAGAAATAAAGAATTCGGCATTCTGCTCATGCAGGGCATCACGCCGGGGCAGCTGAGAAAGCTCATTACTGCGGA
AAATATGATCATCGGCGTCATGTCAATTGCAGCCGGTATTATCGGAGGATTCATTTTTTCAAAGACGTTCTTTACGGTCG
GCGCTTATATTTTAGAAATGGACGCGCTGCCTTTGTATATGCCTTGGAAAGCGCTCGGTATTACGGCCTGCGGATTTCTG
CTCTTATTTTTCTTTTTATCGCAGTTTACGATCCTTTTTGTCAGATCAAATACGGTTATCAAATTAATAAAGGGCACTGG
CAAGGTTAAACCGGAGCCTAAGCCGTCCGTGCTTCTGTCCTTATTCGGCATCGCCTGTCTGTGCGGCGGGTACGGCATGG
TTCTTAAAGGCAATGTCCACGGGGCCGAACCGTTTATCATTTTACTGCTCACCGTTATCGGAACATATTTCTTTTTCAGC
CAAAGCAGCATATGGATTCTGCGCGCGCTGAAGAAGTGGAAAACCTTTTATCTGCGCGGGAAAAACATCATTTGGGTTTC
TGACCTTGTCTATCGTCTAAAAGACAACGCCCGCCTGTTCTTTATTGTCAGCATTATTTCCGCGGTTGCGTTTACTGCGA
CAGGCGTGCTCGCAATGTACAAATCGACCGTCGGAGCGGAAGAGTCCGCTTATGAAATGGAGTATTTATCTTACAGCAAC
AATCCAAAAGAACAGACTCATTTGAAAGATATTGACCATGAACTGAAAACACACGGTTTTACGTATACGAAAGACAAAAT
AGATGTTTCCTATGTTCGCTATCAGGAAGGAGAAACTGTTCCCCCTGTTTACATGATCAGTGAATCGGATGCGGCAAAAT
ACTTCCATGTCAAAGTGAACGGCCTGAAAGAAGACGAGGCTGTCTATTTCCCGGGAACGTATGACCGCAATTTCAAAAAC
GAAGCGCCGGATCAGCTGAAGCTGCTGAACCAAAAAGGGGAGCTGTCTGATCAAAAACTGTCGGTAAAAGAAGTCAAAAA
ACCGCTGATCTCATTGAATGCTATCATCGCGGTGAATGATCAAACCTTTGATCAGCTGAAATCACTCGGTGATAAAGCGT
CATTATACGGCTACAGCTATGATCATTGGAAAGACAGTCTTGAGATCAGCCAATCCTTGCAAAATGAGATTTACGGCAAT
TATATCGACGTGCATTCTGATTTTGCTTCAAAAGCGGGGACTTACTATGATACGGTGCAGCTGCCGAGCCTGAGTCTATT
TATCGGCCTGTTTATCGCAATTGTATTCTTTGTCGCGGCAGCAAGTTTCTTATATTTCAGGCTGTTCACTGATTTAGATG
AAGACCGGGAGCGCTACCGTTCACTGGCCAAAATCGGCCTGAGTGAGCGAGAAATGGCGCAAAGCGTGACAATACAATTG
GCGATTCTTTTCTTCTTTCCATTTGTCATTGCCGTCATGCATACACTGTTTGCCTTGAGAACATTGGCTGTGGAAGGATA
TTCCGATGTAGCGGGGCCGCTCAGTCTCACCATCGGAGGGTTTTTCATTTTTCAGCTTCTATTCTTCCTCGCGGTGCGGT
CAAGCTATTTGAAAAAAATGAACAAGTAA

Upstream 100 bases:

>100_bases
AAAGACGGCGAACTGTTTAATGAGATTTACCGCGGGGAAAACCGCCAAGTATTTTATGAACAAATTCTCGATGTGCTGTC
TATGCTGGGGGGAAACGCAA

Downstream 100 bases:

>100_bases
GGGGAGTGCAAAGATGAAAAAAGCAATGGCAATCCTGGCCGTCTTGGCGGCTGCTGCCGTAATATGCGGGCTTCTCTTTT
TTCATAACGATGTTACAGAC

Product: cationic peptides ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 622; Mature: 621

Protein sequence:

>622_residues
MTFLQFAYKNVTRNKRAYLAFFLSSAFSVLIFFTFAMFLFHPALKEGYLNNIAKKGLTAAEWMIFVFSFLFVLYSVNAFL
KSRNKEFGILLMQGITPGQLRKLITAENMIIGVMSIAAGIIGGFIFSKTFFTVGAYILEMDALPLYMPWKALGITACGFL
LLFFFLSQFTILFVRSNTVIKLIKGTGKVKPEPKPSVLLSLFGIACLCGGYGMVLKGNVHGAEPFIILLLTVIGTYFFFS
QSSIWILRALKKWKTFYLRGKNIIWVSDLVYRLKDNARLFFIVSIISAVAFTATGVLAMYKSTVGAEESAYEMEYLSYSN
NPKEQTHLKDIDHELKTHGFTYTKDKIDVSYVRYQEGETVPPVYMISESDAAKYFHVKVNGLKEDEAVYFPGTYDRNFKN
EAPDQLKLLNQKGELSDQKLSVKEVKKPLISLNAIIAVNDQTFDQLKSLGDKASLYGYSYDHWKDSLEISQSLQNEIYGN
YIDVHSDFASKAGTYYDTVQLPSLSLFIGLFIAIVFFVAAASFLYFRLFTDLDEDRERYRSLAKIGLSEREMAQSVTIQL
AILFFFPFVIAVMHTLFALRTLAVEGYSDVAGPLSLTIGGFFIFQLLFFLAVRSSYLKKMNK

Sequences:

>Translated_622_residues
MTFLQFAYKNVTRNKRAYLAFFLSSAFSVLIFFTFAMFLFHPALKEGYLNNIAKKGLTAAEWMIFVFSFLFVLYSVNAFL
KSRNKEFGILLMQGITPGQLRKLITAENMIIGVMSIAAGIIGGFIFSKTFFTVGAYILEMDALPLYMPWKALGITACGFL
LLFFFLSQFTILFVRSNTVIKLIKGTGKVKPEPKPSVLLSLFGIACLCGGYGMVLKGNVHGAEPFIILLLTVIGTYFFFS
QSSIWILRALKKWKTFYLRGKNIIWVSDLVYRLKDNARLFFIVSIISAVAFTATGVLAMYKSTVGAEESAYEMEYLSYSN
NPKEQTHLKDIDHELKTHGFTYTKDKIDVSYVRYQEGETVPPVYMISESDAAKYFHVKVNGLKEDEAVYFPGTYDRNFKN
EAPDQLKLLNQKGELSDQKLSVKEVKKPLISLNAIIAVNDQTFDQLKSLGDKASLYGYSYDHWKDSLEISQSLQNEIYGN
YIDVHSDFASKAGTYYDTVQLPSLSLFIGLFIAIVFFVAAASFLYFRLFTDLDEDRERYRSLAKIGLSEREMAQSVTIQL
AILFFFPFVIAVMHTLFALRTLAVEGYSDVAGPLSLTIGGFFIFQLLFFLAVRSSYLKKMNK
>Mature_621_residues
TFLQFAYKNVTRNKRAYLAFFLSSAFSVLIFFTFAMFLFHPALKEGYLNNIAKKGLTAAEWMIFVFSFLFVLYSVNAFLK
SRNKEFGILLMQGITPGQLRKLITAENMIIGVMSIAAGIIGGFIFSKTFFTVGAYILEMDALPLYMPWKALGITACGFLL
LFFFLSQFTILFVRSNTVIKLIKGTGKVKPEPKPSVLLSLFGIACLCGGYGMVLKGNVHGAEPFIILLLTVIGTYFFFSQ
SSIWILRALKKWKTFYLRGKNIIWVSDLVYRLKDNARLFFIVSIISAVAFTATGVLAMYKSTVGAEESAYEMEYLSYSNN
PKEQTHLKDIDHELKTHGFTYTKDKIDVSYVRYQEGETVPPVYMISESDAAKYFHVKVNGLKEDEAVYFPGTYDRNFKNE
APDQLKLLNQKGELSDQKLSVKEVKKPLISLNAIIAVNDQTFDQLKSLGDKASLYGYSYDHWKDSLEISQSLQNEIYGNY
IDVHSDFASKAGTYYDTVQLPSLSLFIGLFIAIVFFVAAASFLYFRLFTDLDEDRERYRSLAKIGLSEREMAQSVTIQLA
ILFFFPFVIAVMHTLFALRTLAVEGYSDVAGPLSLTIGGFFIFQLLFFLAVRSSYLKKMNK

Specific function: Part of the ABC transporter complex yxdLM which could be involved in peptide resistance

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXDM_BACSU (P42424)

Other databases:

- EMBL:   D45912
- EMBL:   AL009126
- EMBL:   D14399
- PIR:   B70074
- RefSeq:   NP_391842.2
- EnsemblBacteria:   EBBACT00000001277
- GeneID:   937589
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39630
- NMPDR:   fig|224308.1.peg.3968
- GenoList:   BSU39630
- GeneTree:   EBGT00070000031766
- HOGENOM:   HBG425420
- ProtClustDB:   CLSK888169
- BioCyc:   BSUB:BSU39630-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003838

Pfam domain/function: PF02687 FtsX

EC number: NA

Molecular weight: Translated: 70478; Mature: 70347

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x125b5534)-; HASH(0x12fa9a8c)-; HASH(0x13676b7c)-; HASH(0x12dc7218)-; HASH(0x12b46bc8)-; HASH(0x136ebef4)-; HASH(0x1308bc98)-; HASH(0x13285fcc)-; HASH(0x13391ca0)-; HASH(0x1355a0b8)-;

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFLQFAYKNVTRNKRAYLAFFLSSAFSVLIFFTFAMFLFHPALKEGYLNNIAKKGLTAA
CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EWMIFVFSFLFVLYSVNAFLKSRNKEFGILLMQGITPGQLRKLITAENMIIGVMSIAAGI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGGFIFSKTFFTVGAYILEMDALPLYMPWKALGITACGFLLLFFFLSQFTILFVRSNTVI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEE
KLIKGTGKVKPEPKPSVLLSLFGIACLCGGYGMVLKGNVHGAEPFIILLLTVIGTYFFFS
EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
QSSIWILRALKKWKTFYLRGKNIIWVSDLVYRLKDNARLFFIVSIISAVAFTATGVLAMY
CCHHHHHHHHHHHHHHEEECCCEEEHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
KSTVGAEESAYEMEYLSYSNNPKEQTHLKDIDHELKTHGFTYTKDKIDVSYVRYQEGETV
HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCC
PPVYMISESDAAKYFHVKVNGLKEDEAVYFPGTYDRNFKNEAPDQLKLLNQKGELSDQKL
CCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
SVKEVKKPLISLNAIIAVNDQTFDQLKSLGDKASLYGYSYDHWKDSLEISQSLQNEIYGN
CHHHHHHHHHEEEEEEEECCCHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCC
YIDVHSDFASKAGTYYDTVQLPSLSLFIGLFIAIVFFVAAASFLYFRLFTDLDEDRERYR
EEEECHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SLAKIGLSEREMAQSVTIQLAILFFFPFVIAVMHTLFALRTLAVEGYSDVAGPLSLTIGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
FFIFQLLFFLAVRSSYLKKMNK
HHHHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure 
TFLQFAYKNVTRNKRAYLAFFLSSAFSVLIFFTFAMFLFHPALKEGYLNNIAKKGLTAA
CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
EWMIFVFSFLFVLYSVNAFLKSRNKEFGILLMQGITPGQLRKLITAENMIIGVMSIAAGI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
IGGFIFSKTFFTVGAYILEMDALPLYMPWKALGITACGFLLLFFFLSQFTILFVRSNTVI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEE
KLIKGTGKVKPEPKPSVLLSLFGIACLCGGYGMVLKGNVHGAEPFIILLLTVIGTYFFFS
EEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
QSSIWILRALKKWKTFYLRGKNIIWVSDLVYRLKDNARLFFIVSIISAVAFTATGVLAMY
CCHHHHHHHHHHHHHHEEECCCEEEHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHH
KSTVGAEESAYEMEYLSYSNNPKEQTHLKDIDHELKTHGFTYTKDKIDVSYVRYQEGETV
HHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEECCCCEEEEEEECCCCCC
PPVYMISESDAAKYFHVKVNGLKEDEAVYFPGTYDRNFKNEAPDQLKLLNQKGELSDQKL
CCEEEEECCCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
SVKEVKKPLISLNAIIAVNDQTFDQLKSLGDKASLYGYSYDHWKDSLEISQSLQNEIYGN
CHHHHHHHHHEEEEEEEECCCHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCC
YIDVHSDFASKAGTYYDTVQLPSLSLFIGLFIAIVFFVAAASFLYFRLFTDLDEDRERYR
EEEECHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
SLAKIGLSEREMAQSVTIQLAILFFFPFVIAVMHTLFALRTLAVEGYSDVAGPLSLTIGG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
FFIFQLLFFLAVRSSYLKKMNK
HHHHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377; 7952181