Click here to switch to the map view.

The map label for this gene is abnB

Identifier: 255767834

GI number: 255767834

Start: 4039466

End: 4040875

Strand: Reverse

Name: abnB

Synonym: BSU39330

Alternate gene names: 255767834

Gene position: 4040875-4039466 (Counterclockwise)

Preceding gene: 255767835

Following gene: 16080983

Centisome position: 95.86

GC content: 48.51

Gene sequence:

>1410_bases
ATGTTCAACCGATTGTTCCGTGTATGTTTTCTTGCAGCTCTTATCATGGCCTTCACCCTCCCAAACTCCGTCTATGCACA
AAAACCTATATTTAAAGAAGTCAGCGTCCATGACCCTTCCATCATTGAAACAAACGGCACTTTTTATGTTTTTGGATCTC
ATCTCGCTTCAGCTAAATCGAATGACCTCATGCAATGGCAGCAGCTGACCACCAGCGTAAGCAATGACAACCCACTTATC
CCGAATGTCTATGAAGAATTAAAAGAAACCTTCGAATGGGCGCAATCCGATACTCTTTGGGCGGCTGACGTCACGCAGCT
GGCGGACGGCAAATACTACATGTACTACAACGCCTGCCGCGGCGATTCGCCAAGATCCGCCATGGGTGTTGCCGTTGCTG
ACAACATCGAAGGCCCATACAAAAACAAAGGCATCTTTTTGAAATCAGGAATGGAAGGCACAAGCAGCGATGGAACACCG
TATGATGCAACCAAACATCCGAATGTCGTCGACCCGCATACCTTCTTTGATAAAGACGGCAAGCTGTGGATGGTGTACGG
ATCATACTCAGGCGGCATTTTCATACTTGAAATGAATCCGAAAACGGGCTTCCCGCTTCCTGGACAGGGATATGGGAAAA
AACTGCTCGGCGGCAACCACAGCAGAATCGAAGGCCCGTATGTTCTCTACAATCCAGACACCCAATACTACTACTTATAC
CTATCATATGGCGGTCTCGATGCAACAGGCGGCTACAACATCCGTGTGGCCCGCTCCAAGAAACCGGACGGCCCTTACTA
TGATGCAGAAGGCAATCCAATGCTCGACGTCCGCGGCAAGGGAGGCACATTCTTCGACGACCGTTCCATCGAACCATACG
GCGTCAAACTCATGGGCAGCTACACTTTTGAAACAGAAAATGAAAAAGGCACCGGGTACGTCTCACCAGGCCACAACTCC
GCATACTATGATGAAAAAACCGGGCGTTCCTATTTAATCTTCCACACCCGCTTCCCGGGCAGGGGTGAAGAACACGAAGT
CAGAGTCCACCAATTGTTCATGAACAAAGACGGCTGGCCGGTAGCAGCACCATATCGTTATGCGGGCGAAACATTGAAAG
AAGTAAAACAAAAAGACATCACAGGAACATACAAACTTATCCAGCACGGAAAAGACATCTCAGCCGACATCAAACAAACC
ATCAACATCCAGCTCAACAAAAACCACACCATTTCCGGGGAAATGACCGGAACATGGAGGAAAACCGGAAAAAACACCGC
CGACATCACGTTAGCAGGCAAGAAGTATAACGGGGTATTTTTACGCCAGTGGGATTCGGTGAGAGAGAAGAACGTCATGA
CGTTTAGTGTGCTGAATACCAGCGGTGAGGCTGTATGGGGATCTAAATAA

Upstream 100 bases:

>100_bases
ATGAATATGAAAACATTCGGCTGTTTTAATAGGCCGGGGTATCTTCATAGAGAAATGTAAGCGTTTAAAATTTAATAAAA
AAGAGAGGCGAATTGTTTAG

Downstream 100 bases:

>100_bases
GATGGAGAAGCGCCTTCGAGGGAAGGTGTTTTTTTATGAGCTTTATTGACTATAAGAAACAGTTAAGTGGGAGGAAAAAT
TAGAACTGGAGGAGAGATTA

Product: arabinan endo-1,5-alpha-L-arabinosidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLI
PNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTP
YDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLY
LSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNS
AYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWPVAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQT
INIQLNKNHTISGEMTGTWRKTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK

Sequences:

>Translated_469_residues
MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLI
PNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTP
YDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLY
LSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNS
AYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWPVAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQT
INIQLNKNHTISGEMTGTWRKTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK
>Mature_469_residues
MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKSNDLMQWQQLTTSVSNDNPLI
PNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACRGDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTP
YDATKHPNVVDPHTFFDKDGKLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLY
LSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGSYTFETENEKGTGYVSPGHNS
AYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWPVAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQT
INIQLNKNHTISGEMTGTWRKTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YXIA_BACSU (P42293)

Other databases:

- EMBL:   D31856
- EMBL:   AL009126
- EMBL:   M20659
- PIR:   E70076
- RefSeq:   NP_391812.2
- ProteinModelPortal:   P42293
- SMR:   P42293
- EnsemblBacteria:   EBBACT00000003765
- GeneID:   937533
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU39330
- NMPDR:   fig|224308.1.peg.3938
- GenoList:   BSU39330
- GeneTree:   EBGT00050000001042
- HOGENOM:   HBG338482
- ProtClustDB:   CLSK888149
- BioCyc:   BSUB:BSU39330-MONOMER
- InterPro:   IPR006710
- PANTHER:   PTHR22925

Pfam domain/function: PF04616 Glyco_hydro_43

EC number: NA

Molecular weight: Translated: 52608; Mature: 52608

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00867 CPSASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKS
CHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCEEECCCEEEEEECCCCCCCC
NDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEEEECC
GDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDG
CCCCCHHEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
KLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLY
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEECCCCCEEEEE
LSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGS
EEECCEECCCCEEEEEECCCCCCCCEECCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE
YTFETENEKGTGYVSPGHNSAYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWP
EEEECCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHEEEEEEEECCCCCE
VAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQTINIQLNKNHTISGEMTGTWR
ECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEEEECCCEEECCCCCCCHH
KTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK
HCCCCCEEEEEECCCCCCEEEEECHHHHHCCEEEEEEECCCCCEECCCC
>Mature Secondary Structure
MFNRLFRVCFLAALIMAFTLPNSVYAQKPIFKEVSVHDPSIIETNGTFYVFGSHLASAKS
CHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHCCCCCCCCEEECCCEEEEEECCCCCCCC
NDLMQWQQLTTSVSNDNPLIPNVYEELKETFEWAQSDTLWAADVTQLADGKYYMYYNACR
CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHCCCEEEEEEEECC
GDSPRSAMGVAVADNIEGPYKNKGIFLKSGMEGTSSDGTPYDATKHPNVVDPHTFFDKDG
CCCCCHHEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
KLWMVYGSYSGGIFILEMNPKTGFPLPGQGYGKKLLGGNHSRIEGPYVLYNPDTQYYYLY
CEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEECCCCCEEEEE
LSYGGLDATGGYNIRVARSKKPDGPYYDAEGNPMLDVRGKGGTFFDDRSIEPYGVKLMGS
EEECCEECCCCEEEEEECCCCCCCCEECCCCCEEEEEECCCCCEECCCCCCCCCEEEEEE
YTFETENEKGTGYVSPGHNSAYYDEKTGRSYLIFHTRFPGRGEEHEVRVHQLFMNKDGWP
EEEECCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHEEEEEEEECCCCCE
VAAPYRYAGETLKEVKQKDITGTYKLIQHGKDISADIKQTINIQLNKNHTISGEMTGTWR
ECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEEEEECCCEEECCCCCCCHH
KTGKNTADITLAGKKYNGVFLRQWDSVREKNVMTFSVLNTSGEAVWGSK
HCCCCCEEEEEECCCCCCEEEEECHHHHHCCEEEEEEECCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7704263; 9384377; 2454913