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The map label for this gene is spsF

Identifier: 255767796

GI number: 255767796

Start: 3887026

End: 3887748

Strand: Reverse

Name: spsF

Synonym: BSU37860

Alternate gene names: 255767796

Gene position: 3887748-3887026 (Counterclockwise)

Preceding gene: 16080838

Following gene: 16080836

Centisome position: 92.22

GC content: 47.44

Gene sequence:

>723_bases
ATGAATGATATTCTCTTTATCATTCAAGCAAGAATGGGTTCAACAAGGCTTCCGGGAAAAGTGCTTCGGCCGCTCGGATC
GAATCGTTTACTTGATATTCTCGTTCACCGTGTCCGGCAAAGCGCGTTTTACCAAAAGGATCGGGATAATCTTGTCATCG
CCACGTCTGACAAAGAAACTGACGACATATTAGAGGCGCACTGTATCAAACAAGGCTTTCGTGTTTTCCGCGGGAGCGAA
GAACGTGTCCTCGATAGGTTTGTGAAGGTCATAGAAGCTGTTAAACCGTCAGTCATCATCCGGTTAACAGGTGATAATCC
GTTTGTCGATCCTGAGCTGCTCGATGTAATGATTCAGGCGCATTTTGATCAAGGCTCGGATTATACGTATATCCTGAATG
CCCCATTAGGGATTTGCGGCGAAGTGGTCAACGCCAACCTGTTAATTGACATCAGCCGTATTCAGGCTTTGGAGGATCAA
TATCAGGAGCATGTCACGTTATATATAAGGAATCATCCAGCTCTTTATCGTGTTCAGTTTTTAGAGGCGCCGGAACGATT
TCGCGCCCCTCAATATCGGCTGACCATTGATACAAAGGAAGACTATGAATCGATAAAGGCCCTCTATCAAAAAGCAGGCG
AGCGCCCCGATGTATCCGCCTCAGAGCTTATCACCCTTCTGAACCGGAACCCCGATGCGGCAACCGAACGAGAGGCTGAC
TAG

Upstream 100 bases:

>100_bases
TTTTTTGAACTGCTGACCAGCGGTGTTCGGGCTGTAAGAGACATTCCAGCCGACACAGGCATTGTCTGGGATGACATTTT
ACTGAAGGACAGCCCGTTTC

Downstream 100 bases:

>100_bases
CCATGCATGTTGGGATCTTCGCAGACGGCGGCTATGAAAAGGGAATGGGCCATGTTGTCCGGATGAAGAGGCTTGCGGAG
GGGCTCAAACAGCGATGCTT

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MNDILFIIQARMGSTRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKETDDILEAHCIKQGFRVFRGSE
ERVLDRFVKVIEAVKPSVIIRLTGDNPFVDPELLDVMIQAHFDQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQ
YQEHVTLYIRNHPALYRVQFLEAPERFRAPQYRLTIDTKEDYESIKALYQKAGERPDVSASELITLLNRNPDAATEREAD

Sequences:

>Translated_240_residues
MNDILFIIQARMGSTRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKETDDILEAHCIKQGFRVFRGSE
ERVLDRFVKVIEAVKPSVIIRLTGDNPFVDPELLDVMIQAHFDQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQ
YQEHVTLYIRNHPALYRVQFLEAPERFRAPQYRLTIDTKEDYESIKALYQKAGERPDVSASELITLLNRNPDAATEREAD
>Mature_240_residues
MNDILFIIQARMGSTRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKETDDILEAHCIKQGFRVFRGSE
ERVLDRFVKVIEAVKPSVIIRLTGDNPFVDPELLDVMIQAHFDQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQ
YQEHVTLYIRNHPALYRVQFLEAPERFRAPQYRLTIDTKEDYESIKALYQKAGERPDVSASELITLLNRNPDAATEREAD

Specific function: Unknown

COG id: COG1861

COG function: function code M; Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CMP-NeuNAc synthase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SPSF_BACSU (P39626)

Other databases:

- EMBL:   X73124
- EMBL:   AL009126
- PIR:   S39723
- RefSeq:   NP_391665.2
- ProteinModelPortal:   P39626
- SMR:   P39626
- EnsemblBacteria:   EBBACT00000002892
- GeneID:   937232
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU37860
- NMPDR:   fig|224308.1.peg.3791
- GenoList:   BSU37860
- GeneTree:   EBGT00050000001673
- HOGENOM:   HBG488849
- ProtClustDB:   CLSK888081
- BioCyc:   BSUB:BSU37860-MONOMER
- InterPro:   IPR003329

Pfam domain/function: PF02348 CTP_transf_3

EC number: NA

Molecular weight: Translated: 27484; Mature: 27484

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDILFIIQARMGSTRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKET
CCCEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
DDILEAHCIKQGFRVFRGSEERVLDRFVKVIEAVKPSVIIRLTGDNPFVDPELLDVMIQA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
HFDQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQYQEHVTLYIRNHPALYRVQF
HCCCCCCEEEEEECCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHEEEEEECCCCEEEEEE
LEAPERFRAPQYRLTIDTKEDYESIKALYQKAGERPDVSASELITLLNRNPDAATEREAD
CCCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MNDILFIIQARMGSTRLPGKVLRPLGSNRLLDILVHRVRQSAFYQKDRDNLVIATSDKET
CCCEEEEEEECCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH
DDILEAHCIKQGFRVFRGSEERVLDRFVKVIEAVKPSVIIRLTGDNPFVDPELLDVMIQA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHH
HFDQGSDYTYILNAPLGICGEVVNANLLIDISRIQALEDQYQEHVTLYIRNHPALYRVQF
HCCCCCCEEEEEECCHHHHHHHHCCEEEEEHHHHHHHHHHHHHHEEEEEECCCCEEEEEE
LEAPERFRAPQYRLTIDTKEDYESIKALYQKAGERPDVSASELITLLNRNPDAATEREAD
CCCHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377