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The map label for this gene is araQ

Identifier: 255767662

GI number: 255767662

Start: 2939851

End: 2940696

Strand: Reverse

Name: araQ

Synonym: BSU28730

Alternate gene names: 255767662

Gene position: 2940696-2939851 (Counterclockwise)

Preceding gene: 16079926

Following gene: 255767661

Centisome position: 69.76

GC content: 42.43

Gene sequence:

>846_bases
ATGTTGCGGCACAGTCCTCAGTTTAGCGTTTATAGAATTGCGCTGACCCTGTTTTTTATGATGCTGAGCCTATTGTATCT
TTTTCCGATTTTCTGTTTGCTTTTAGGATCATTAAAGCCGTCATCTGAGCTTTTGCGTGTGGGGCTGAATCTTGATATTG
ATCCAAAAGTGATGAGTTTTGATAACTACACATTTCTGTTTAATGGCGGCAGCATTTATTTCAAATGGTTTTTTAACAGT
CTTGTACTCGGACTTTTTACGACTGTGCTCACTCTGTTTTTTTCTTCGATGATCGGGTACGGGCTTGCGGTTTATGATTT
TAAGGGCAGAAATATCATCTTTGTTCTTGTGCTGATTATTATGATGGTTCCGCTGGAAGTGATGATGCTTCCTCTGTTTA
AACTTACTGTCGGACTGCACTTGATCGATTCATATACGGGTGTCATATTGCCGTTTATCGTTTCACCTGTTGCTGTTTTC
TTTTTCAGGCAATATGCTCTTGGCCTTCCAAGAGATCTGCTGGACTCTGCAAGGATGGACGGCTGTACGGAATTCGGCAT
CTTTTTCAGGATTATGGCACCGCTGATGAAACCGGCTTTCGGTGCGATGATTATCCTTCAGTCCTTAAACAGCTGGAACA
ACTTCTTGTGGCCGCTGATTGTGCTTCGGTCGAAAGAAATGTTTACGCTTCCAATAGGGCTGTCCAGCTTGCTGAGCCCT
TATGGAAATAATTACGACATGCTTATATCCGGCTCAGTATTTGCGATTTTGCCGGTGATTATCATTTTCTTGTTTTTCCA
AAAGTACTTTATCTCCGGCCTGACGGTAGGGGGAGTCAAAGGTTAA

Upstream 100 bases:

>100_bases
GGGATACGGAGCGGCCATCGGCATTGTGCTTTTGATTGTGATCCTTGTTGTCAGCCTGATTTCATTAAAGCTGTCAGGCT
CGTTTAAGGGGGAGGGATAA

Downstream 100 bases:

>100_bases
TGAAGGAGGAAACGTGTGATGAAAAAAGCGCGAATGATTGTAGACAAAGAATATAAAATCGGTGAAGTAGATAAACGGAT
TTATGGCTCGTTTATCGAAC

Product: arabinose/arabinan permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNGGSIYFKWFFNS
LVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVF
FFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP
YGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG

Sequences:

>Translated_281_residues
MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNGGSIYFKWFFNS
LVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVF
FFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP
YGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG
>Mature_281_residues
MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSFDNYTFLFNGGSIYFKWFFNS
LVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLIIMMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVF
FFRQYALGLPRDLLDSARMDGCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP
YGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1787571, Length=261, Percent_Identity=29.1187739463602, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789860, Length=204, Percent_Identity=27.4509803921569, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=24.8826291079812, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARAQ_BACSU (P94530)

Other databases:

- EMBL:   X89810
- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   C69588
- RefSeq:   NP_390751.2
- ProteinModelPortal:   P94530
- SMR:   P94530
- EnsemblBacteria:   EBBACT00000001566
- GeneID:   937434
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28730
- NMPDR:   fig|224308.1.peg.2876
- GenoList:   BSU28730
- GeneTree:   EBGT00050000000646
- HOGENOM:   HBG729451
- PhylomeDB:   P94530
- ProtClustDB:   CLSK872866
- BioCyc:   BSUB:BSU28730-MONOMER
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 31847; Mature: 31847

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11724810)-; HASH(0x112e19dc)-; HASH(0x118b7ae0)-; HASH(0x111c80b4)-; HASH(0xe5540e0)-; HASH(0xeeca1bc)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEE
DNYTFLFNGGSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLII
CCEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
MMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFFFRQYALGLPRDLLDSARMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCC
YGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
>Mature Secondary Structure
MLRHSPQFSVYRIALTLFFMMLSLLYLFPIFCLLLGSLKPSSELLRVGLNLDIDPKVMSF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEE
DNYTFLFNGGSIYFKWFFNSLVLGLFTTVLTLFFSSMIGYGLAVYDFKGRNIIFVLVLII
CCEEEEEECCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHH
MMVPLEVMMLPLFKLTVGLHLIDSYTGVILPFIVSPVAVFFFRQYALGLPRDLLDSARMD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC
GCTEFGIFFRIMAPLMKPAFGAMIILQSLNSWNNFLWPLIVLRSKEMFTLPIGLSSLLSP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCC
YGNNYDMLISGSVFAILPVIIIFLFFQKYFISGLTVGGVKG
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639