Click here to switch to the map view.

The map label for this gene is yraM

Identifier: 255767618

GI number: 255767618

Start: 2746608

End: 2747711

Strand: Direct

Name: yraM

Synonym: BSU26880

Alternate gene names: 255767618

Gene position: 2746608-2747711 (Clockwise)

Preceding gene: 255767617

Following gene: 16079743

Centisome position: 65.15

GC content: 42.57

Gene sequence:

>1104_bases
ATGGTCAAGACGAATGTAACAATCATGAGAGGCGGAACAAGCAAAGGCGTTTTTTTCCACGAATCAGCCATGCCTAACAA
TAAAAACGAATGGGAGCCCTTTTTGCTTGATGTCATGGGAAGTCCTGATAAAAGACAAATAGATGGTTTGGGTGGCGGTA
ATTCCCTTACTAGTAAAGTGGCAATAATAAAGAAAGCATATACTTCGGATATTGATGTTCACTATACTTTCGGTCAAGTC
AGCATTTCGGAAGAAAAGGTGGACTTTAAGGGGAACTGCGGAAATATCTCCGCTGCTGTTGGTCCATTTGCTATTGAAGA
AGGACTTGTAAAAGCGAAAGAACCAATGACTGCGGTAAGGATCCTGAATACCAATACGAATAAAATGATCATTGCGGAAG
TAGAAGTGGAAGACGGTCAGGTCAAATATGACGGAGATGTTACGATATCTGGAGTACCTGGATCTGGATCTCCAATCTAT
TTAAACTTTCATGATGCCGCTGGTTCAGTTACCGGTCATTTATTGCCTACTGGAAATAGTTCGGAGTTTTTAGATACAAG
TCAAGGCCAAATAGAGGTGTCTATTATCGACTATGCAAATCCATTAGTTTTTGTGGAAGCGAGCAGTATCGGCCTGGATG
GAACGGAACTTGCAGAAGAATTTACTGATCTACAGTTGGCTCAATTTGAAGAATTAAGATCCATTGCGGCAGAGAAATGC
GGCTTTGCCAGTCGATTTTCAGCTACAAAGTTATCGCCGGCTGTCCCCAAACTGGCTATAGTAGCAAAACCAGAGAAATA
TAAAGATAGTACAGGTGCTTGGCATTCAAGCGTTGAGATGGACTTACACATCAGGATGATGTCCATGCAAAAGCCACATC
AAGCACTGGCTGTCACTGGAGCGATATGTACAACAAGAGCCCTTTCAGTGGAAGGTGCAATCCCTGCAAGAATAGCAAAA
AACCACTCTACAAAGGTTCGGCTAGCTCATTCTTCTGGTATTATTGAAACAATGGTGGAGCCCACTGGTATAAAGATCGT
CCGTACCGCACGACGTATTATGGACGGAACAGTTTATACGCATGGAGACTATCAAATGATGTAG

Upstream 100 bases:

>100_bases
TTTTATCGAATATTAAGAAAACTTATATTTTATTTTTATTTTTTTACCTTCTACACTAAAAAACATAAAAAATACTACCT
TTAAGATGAGGATGATGACG

Downstream 100 bases:

>100_bases
ATGGACTGTGCAAAAAGCCTCCCCCCTTTCCATCGTTAATAGATGGATTGAATGCGCCTTCTTGCACAGATCCATTGTAA
TCTTGCATGGCTTTAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKVAIIKKAYTSDIDVHYTFGQV
SISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVRILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIY
LNFHDAAGSVTGHLLPTGNSSEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKC
GFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTGAICTTRALSVEGAIPARIAK
NHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYTHGDYQMM

Sequences:

>Translated_367_residues
MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKVAIIKKAYTSDIDVHYTFGQV
SISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVRILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIY
LNFHDAAGSVTGHLLPTGNSSEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKC
GFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTGAICTTRALSVEGAIPARIAK
NHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYTHGDYQMM
>Mature_367_residues
MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKVAIIKKAYTSDIDVHYTFGQV
SISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVRILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIY
LNFHDAAGSVTGHLLPTGNSSEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKC
GFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTGAICTTRALSVEGAIPARIAK
NHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYTHGDYQMM

Specific function: Unknown

COG id: COG2828

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybhH

Homologues:

Organism=Escherichia coli, GI1786985, Length=369, Percent_Identity=35.230352303523, Blast_Score=218, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YRAM_BACSU (O07931)

Other databases:

- EMBL:   X92868
- EMBL:   U93875
- EMBL:   AL009126
- PIR:   E69971
- RefSeq:   NP_390565.2
- ProteinModelPortal:   O07931
- SMR:   O07931
- EnsemblBacteria:   EBBACT00000001930
- GeneID:   936343
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU26880
- NMPDR:   fig|224308.1.peg.2690
- GenoList:   BSU26880
- GeneTree:   EBGT00050000002312
- HOGENOM:   HBG321890
- PhylomeDB:   O07931
- ProtClustDB:   CLSK887642
- BioCyc:   BSUB:BSU26880-MONOMER
- InterPro:   IPR007400

Pfam domain/function: PF04303 PrpF

EC number: NA

Molecular weight: Translated: 39546; Mature: 39546

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKV
CCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHHH
AIIKKAYTSDIDVHYTFGQVSISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVR
HEEEHHCCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHCCHHCCCCCEEEE
ILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIYLNFHDAAGSVTGHLLPTGNS
EEECCCCEEEEEEEEECCCEEEECCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC
SEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKC
CCCEECCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
GFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTG
CCHHHCCCCCCCCCCCEEEEEECCHHCCCCCCCCCCEEEEEEEEEEECCCCCCHHEEEEH
AICTTRALSVEGAIPARIAKNHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYT
HHHHEEEEEECCCCCHHHHCCCCCEEEEEECCCCCEEHCCCCCEEHHHHHHHHHCCEEEE
HGDYQMM
CCCEEEC
>Mature Secondary Structure
MVKTNVTIMRGGTSKGVFFHESAMPNNKNEWEPFLLDVMGSPDKRQIDGLGGGNSLTSKV
CCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCHHHHH
AIIKKAYTSDIDVHYTFGQVSISEEKVDFKGNCGNISAAVGPFAIEEGLVKAKEPMTAVR
HEEEHHCCCCCEEEEEEEEEEECCCCEEECCCCCCCCCCCCCHHHHHCCHHCCCCCEEEE
ILNTNTNKMIIAEVEVEDGQVKYDGDVTISGVPGSGSPIYLNFHDAAGSVTGHLLPTGNS
EEECCCCEEEEEEEEECCCEEEECCCEEEEECCCCCCEEEEEEECCCCCEEEEEEECCCC
SEFLDTSQGQIEVSIIDYANPLVFVEASSIGLDGTELAEEFTDLQLAQFEELRSIAAEKC
CCCEECCCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHC
GFASRFSATKLSPAVPKLAIVAKPEKYKDSTGAWHSSVEMDLHIRMMSMQKPHQALAVTG
CCHHHCCCCCCCCCCCEEEEEECCHHCCCCCCCCCCEEEEEEEEEEECCCCCCHHEEEEH
AICTTRALSVEGAIPARIAKNHSTKVRLAHSSGIIETMVEPTGIKIVRTARRIMDGTVYT
HHHHEEEEEECCCCCHHHHCCCCCEEEEEECCCCCEEHCCCCCEEHHHHHHHHHCCEEEE
HGDYQMM
CCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141695; 9308178; 9384377