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The map label for this gene is yqxC

Identifier: 255767537

GI number: 255767537

Start: 2522871

End: 2523716

Strand: Reverse

Name: yqxC

Synonym: BSU24260

Alternate gene names: 255767537

Gene position: 2523716-2522871 (Counterclockwise)

Preceding gene: 16079483

Following gene: 16079481

Centisome position: 59.87

GC content: 47.16

Gene sequence:

>846_bases
ATGACGTCAAAGAAAGAACGATTAGATGTATTATTAGTGGAAAGAGGGCTGGCGGAAACGCGTGAAAAAGCCAAAAGAGC
CATTATGGCGGGGATCGTCTATTCAAACGAAAACCGCTTGGACAAGCCTGGAGAAAAAATTGACCGCGACCTTCCGTTAA
CTGTCAAAGGAAACCCGCTGAGGTATGTGAGCAGGGGCGGCTTAAAGCTCGAAAAAGCGTTGAAGGAATTTCCCGTCTCT
GTCAAAGATAAAATTATGATTGATATTGGCTCCTCCACCGGCGGTTTTACGGACTGCGCTTTGCAAAATGGAGCTAAACA
GTCATACGCTGTGGATGTAGGCTATAATCAGCTTGCATGGAAGCTTAGACAGGATGAACGGGTCGTCGTGATGGAACGGA
CGAACTTTCGTTATGCAACACCGGCAGACTTTACAAAGGGCATGCCGGAGTTTGCCACAATTGATGTGTCCTTTATTTCA
CTGCGGCTCATCCTGCCTGTCCTAAGGACTTTGCTCGTACCGGGCAGCGACTGCATGGCTTTAGTTAAGCCTCAGTTTGA
AGCGGGACGGGAATCCGTCGGCAAAAAAGGGATTGTTAGAGATCCTAAAGTGCATGCTGATGTGCTCAAGCGAATGATCA
GTTTTTCTGCCGCTGAAGGCTATATCTGTAAAGGCTTGTCATTTTCTCCAATCACGGGAGGAGACGGAAATATTGAGTTT
CTCCTTCATTTGCATTGGCCGGGAGAGGGACAGGAAGGCCAGGAACTGCCGGAAGAAGAGATCATGCGCGTTGTAGAAGA
AGCACATAAGACGTTAAAAGAAAAAAAAGCAGATGTACCGGAATAA

Upstream 100 bases:

>100_bases
GTGTAACAGCGCTTCTTGAGGAAATTGGACTGACAAAACAGCAGGTGGCAAATCGTATTAGATTACTGATGCCACCAAAG
ACACACAAAGGAATTGGATC

Downstream 100 bases:

>100_bases
TAGGGCGCTATTATTCCTTTTTTCTGCATTCATGTACAATGTGCAGAGAATCATATAACATAAAAGAACAGATAAGCTTG
GAAATAGAGGTGCTTACATG

Product: methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTSKKERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPLRYVSRGGLKLEKALKEFPVS
VKDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAWKLRQDERVVVMERTNFRYATPADFTKGMPEFATIDVSFIS
LRLILPVLRTLLVPGSDCMALVKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEF
LLHLHWPGEGQEGQELPEEEIMRVVEEAHKTLKEKKADVPE

Sequences:

>Translated_281_residues
MTSKKERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPLRYVSRGGLKLEKALKEFPVS
VKDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAWKLRQDERVVVMERTNFRYATPADFTKGMPEFATIDVSFIS
LRLILPVLRTLLVPGSDCMALVKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEF
LLHLHWPGEGQEGQELPEEEIMRVVEEAHKTLKEKKADVPE
>Mature_280_residues
TSKKERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPLRYVSRGGLKLEKALKEFPVSV
KDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAWKLRQDERVVVMERTNFRYATPADFTKGMPEFATIDVSFISL
RLILPVLRTLLVPGSDCMALVKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEFL
LHLHWPGEGQEGQELPEEEIMRVVEEAHKTLKEKKADVPE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YQXC_BACSU (P19672)

Other databases:

- EMBL:   D84432
- EMBL:   AL009126
- EMBL:   M27869
- PIR:   G69967
- RefSeq:   NP_390306.2
- ProteinModelPortal:   P19672
- SMR:   P19672
- EnsemblBacteria:   EBBACT00000000786
- GeneID:   938651
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU24260
- NMPDR:   fig|224308.1.peg.2430
- GenoList:   BSU24260
- GeneTree:   EBGT00050000002794
- HOGENOM:   HBG286208
- ProtClustDB:   CLSK2523442
- BioCyc:   BSUB:BSU24260-MONOMER
- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942
- SMART:   SM00363
- TIGRFAMs:   TIGR00478

Pfam domain/function: PF01728 FtsJ; PF01479 S4

EC number: NA

Molecular weight: Translated: 31275; Mature: 31143

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKKERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHCCCCCEEECCCCE
RYVSRGGLKLEKALKEFPVSVKDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAW
EEHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCEEEECCCHHHHH
KLRQDERVVVMERTNFRYATPADFTKGMPEFATIDVSFISLRLILPVLRTLLVPGSDCMA
EECCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHE
LVKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEE
LLHLHWPGEGQEGQELPEEEIMRVVEEAHKTLKEKKADVPE
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSKKERLDVLLVERGLAETREKAKRAIMAGIVYSNENRLDKPGEKIDRDLPLTVKGNPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHCCCCCEEECCCCE
RYVSRGGLKLEKALKEFPVSVKDKIMIDIGSSTGGFTDCALQNGAKQSYAVDVGYNQLAW
EEHHCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCCEEEECCCHHHHH
KLRQDERVVVMERTNFRYATPADFTKGMPEFATIDVSFISLRLILPVLRTLLVPGSDCMA
EECCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHE
LVKPQFEAGRESVGKKGIVRDPKVHADVLKRMISFSAAEGYICKGLSFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEE
LLHLHWPGEGQEGQELPEEEIMRVVEEAHKTLKEKKADVPE
EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400