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The map label for this gene is yobH

Identifier: 255767448

GI number: 255767448

Start: 2063510

End: 2064163

Strand: Reverse

Name: yobH

Synonym: BSU18930

Alternate gene names: 255767448

Gene position: 2064163-2063510 (Counterclockwise)

Preceding gene: 16078954

Following gene: 16078950

Centisome position: 48.96

GC content: 39.14

Gene sequence:

>654_bases
ATGGCCAAAGCAATCCAAAGCAGCATGTGGAGAGAATTTGGTTTGATGTGCACAGTTGGAATTGGTGACAATATGTTGCT
TAGTAAGCTTGCACTTGACCTGGAGAGTAAGAAAACAAAGAGTGGTATTGCACGTTGGAGATATGAAGATGTGCCAAATA
GACTCTGGAAAGTTCGACCTTTGTCTAAAATGTGGGGGATAGGAGGGAGGATGGAAAGAAATCTGAATCGAATGGGTATA
TCAACTGTAGGTCAGTTAGCTAAATTTCCTTTAGAGCTGCTTGAAAAGAAGTTCGGAATAATGGGAAACCAGTTGTACTA
TCATGCTCACGGAATTGATTTATCTGAAATAGGAGCTCCATTGATGCAGGGGCAGATTAGTTTTGGTAAGAGTCAGATTT
TGTTTAGGGATTATACAAAGAGAGAAGAGATTAAAGCTGTGCTCTTGGAGATTTGTGAGGAAGTCGCAAGAAGGGCACGT
ACATATAATAAAGTTGGTCGAACAATAAGTCTAGGAATTGGATACAGTAAAGATGAGCTTGGCGGTGGTTTTCATCGATC
CAAAACAATTGATTTTCCCACAAATATCACGATGGATATTTATAAGTGTTGCTTGATGTTCTTTAATAAGTTTTACTCGG
GCAAAAAACAGTGA

Upstream 100 bases:

>100_bases
GATTACAAAGCTGTTTTACAGATTTGTTCCTGAAAAATGTGTCCACACGTATTCAATTGATTAATCTTTTTTAGATGCAG
GAAAAGAGAATCCTGAAGAA

Downstream 100 bases:

>100_bases
GAAGTATCTCAGTTACGTTTGCAGGTACTGCGCTCCACAGAGCAGGGCTGACCGGTGGACATAAATCATAAAATAAAAGC
CCACTCAAATGTTTGAGTAG

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNRLWKVRPLSKMWGIGGRMERNLNRMGI
STVGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAPLMQGQISFGKSQILFRDYTKREEIKAVLLEICEEVARRAR
TYNKVGRTISLGIGYSKDELGGGFHRSKTIDFPTNITMDIYKCCLMFFNKFYSGKKQ

Sequences:

>Translated_217_residues
MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNRLWKVRPLSKMWGIGGRMERNLNRMGI
STVGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAPLMQGQISFGKSQILFRDYTKREEIKAVLLEICEEVARRAR
TYNKVGRTISLGIGYSKDELGGGFHRSKTIDFPTNITMDIYKCCLMFFNKFYSGKKQ
>Mature_216_residues
AKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNRLWKVRPLSKMWGIGGRMERNLNRMGIS
TVGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAPLMQGQISFGKSQILFRDYTKREEIKAVLLEICEEVARRART
YNKVGRTISLGIGYSKDELGGGFHRSKTIDFPTNITMDIYKCCLMFFNKFYSGKKQ

Specific function: Poorly Processive, Error-Prone DNA Polymerase Involved In Untargeted Mutagenesis. Copies Undamaged DNA At Stalled Replication Forks, Which Arise In Vivo From Mismatched Or Misaligned Primer Ends. These Misaligned Primers Can Be Extended By Poliv. Exhibits

COG id: COG0389

COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 umuC domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017962
- InterPro:   IPR017961
- InterPro:   IPR001126
- InterPro:   IPR017963 [H]

Pfam domain/function: PF00817 IMS [H]

EC number: 2.7.7.7 [C]

Molecular weight: Translated: 24811; Mature: 24679

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: PS50173 UMUC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNRLWKVRP
CCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSKMWGIGGRMERNLNRMGISTVGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCH
LMQGQISFGKSQILFRDYTKREEIKAVLLEICEEVARRARTYNKVGRTISLGIGYSKDEL
HHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
GGGFHRSKTIDFPTNITMDIYKCCLMFFNKFYSGKKQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKAIQSSMWREFGLMCTVGIGDNMLLSKLALDLESKKTKSGIARWRYEDVPNRLWKVRP
CHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LSKMWGIGGRMERNLNRMGISTVGQLAKFPLELLEKKFGIMGNQLYYHAHGIDLSEIGAP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCH
LMQGQISFGKSQILFRDYTKREEIKAVLLEICEEVARRARTYNKVGRTISLGIGYSKDEL
HHHCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHH
GGGFHRSKTIDFPTNITMDIYKCCLMFFNKFYSGKKQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9722542; 9384377 [H]