Click here to switch to the map view.

The map label for this gene is ykcB

Identifier: 255767298

GI number: 255767298

Start: 1354285

End: 1356435

Strand: Direct

Name: ykcB

Synonym: BSU12880

Alternate gene names: 255767298

Gene position: 1354285-1356435 (Clockwise)

Preceding gene: 16078352

Following gene: 255767299

Centisome position: 32.13

GC content: 46.3

Gene sequence:

>2151_bases
GTGGAAAAGAAAAAACGCGAGCTGGATATCGTCCTCCTCCTCATTTTGCTCGCATCTGCATTCTTAAATATCTATAACAT
TTGGAAGGACGACACGGTGAATCCTTATTACACCGCGGCAGTTACAAGTATGATGCAAAGCTTTCATAATTTCTTTTATG
CTTCGTTCGATGCTGCCGGCTTTATAACAGTAGATAAACCGCCTGTTACATACCAAATCCAAACGATCAGCGCACTGATA
TTCGGTATGCACGGCTGGAGCGTCATCCTGCCTCAGGCACTTGCTGGTGTAGGTTCTGTCCTTCTTATGTACTTGCTGAT
AAAGCCGACATTTGGAAAAACGGCGGCGCGTATTGCCTCATTTGTTATGGCATGTACGCCGATAGCTGTAGCTGTAGCAC
GTACAAACAATGTTGATGCATTACTGGTATTTTTCTTATTGCTTGCTACATGGCTTCTCTTTAAAGCGATCAGAAAAGGA
AAGCTGATCTGGCTGTTAGCAGCATTTTTCGTTGTTGGAGTAGGTTTTAATACAAAAATGCTGCAGGCTTACATGATTTT
ACCGGCTTTCTTATTGTTCTATCTGATTGCGGCAAACGCCACAATCAAGAAAAAAATCGTTTCATTGGTAAGTGCGTTAG
CCGTATTAGCAGCCGTTTCGTTATCGTGGCCGCTCATTGTTGACAATATCCCTGCAAGCAAGCGGCCTTATATCGGAAGC
AGCCAAACCAACTCTGTTTTGGAATTGGCTTTCGGCTATAACGGAATCCAGCGGCTGACAGGCCAAAATTCAGGCGGCGG
CCAGGGTGCGCCAAACAAAGACGCTTCAAAAGAAATGTCTTCTTCTGATAACACTCAAGCACCGCCTAATCAGTCATCAA
GCAACAGCTCATCAAGCGATGGTAAATCCTCAAATGGCAATATGGCGGCGCCTCCATCCAATGGCCAAATGCCAAGCGGC
GGTCAAGGAGGCCCTCCAAGCGGCGGAGATGGCGGCCAAGGCGGACCCGGCGGAGACGGAGGGAAAGGCGGTACAGGAAC
CGGTTCGAAAATGCAATCAGGTTCAGGGATGTTTGGAACGGGAACACCTGGTCCACTGCGGCTTTTCCAACAAGAGTTAT
CTGATCAAATCAGCTGGCTTCTGCCATTTGCGATATTTGGAATCGCAGGCTTACTGATCGCTGGCGCAAGAGAAAGAAGA
AGATTATCTGTAGAGCAGAAGGAAACGGTGTTCTGGGTTGCGTGGCTTGTACCGATTGCCGGATTCTTCAGTGTCGCAGA
ATTTTTCCATCATTATTATCTCATCATGCTGGCACCGCCGATTGCGGCTCTTGTCGGTGCGGGGTGGGTCGCTCTTGTTC
ATCTGTACCGCAATCAGACAGGCTGGAAAGCATGGCTTTTGCCGGGAGCAATTATTGCGACAACTGGATTTGAATTGTTT
ATTCTCAGAAACTACAACGATCAAATCGGTGTTGGATGGAGTATCGGGGTAGGTGTTATCGGCGTGTTGTCAGCGATTGC
TTTGCTGCTGTTTAAACAGCGCCAAAAACCGTTCAGTTATTATGTTTCACTTGCAGCTCTCCTCGCATTGCTGGTGATGC
CGATGTATTGGGCAAGTACACCGCTTCTGTACGGAGGCAACAGCTCACTGCCTGAAACAGGCCCTCAACTCGCATCAATG
AGCGGAAAAGGCATGGGAATGTCTGATGCGACTGTAAATGAAAAACTGATCAAATATCTAGAGGAGAATAACTCCGGAGC
TGAATACCTATTCGCCACAACCGATTCGAACACAGCGGCACCATATATCATTAAAACGAAAAAAGCTGTCATGGCTATTG
GTGGATACAGCGGTTCTGACCCGGCAATCACACTGACTCAATTCAAAAAACTTGTAAAAGAAGGAAAAGTGAAATACTTC
TTGGCTTCTGGAATGGGAAGAGGCGGAAACAATGACATTGTTGAATGGGTTGAGAAAAATGGAAAAGAAGTAGCATCAGA
AAAATGGCAATCAAGTTCTGATCAAAAAACAGAAAATACTGATTCAGCTGATACATCAAGCAGCAAGGCTTCAGGTGAAA
ACGGCAAAATGGGCGGACCTGGCGGAATGAATCAGTCAGCAACATTATACGAACTACATGCTGATGAATAG

Upstream 100 bases:

>100_bases
GGAATGGCCTCGGCAAAAATATTGTCTTTGTTTATTAATAGTTTATTCATATTTGCTTGTTACACTATTTCAAAGTTAGA
CAAAAAGGAGTGAAAAATAA

Downstream 100 bases:

>100_bases
GAGGCAAAAACATGAGCAGACATATTCAATATTCAATTGTTGTACCTGTGTATAATGAAGAGCTTGTCATTCATGAAACC
TATCAGCGCTTAAAAGAGGT

Product: integral inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 716; Mature: 716

Protein sequence:

>716_residues
MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSMMQSFHNFFYASFDAAGFITVDKPPVTYQIQTISALI
FGMHGWSVILPQALAGVGSVLLMYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKG
KLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGS
SQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSDGKSSNGNMAAPPSNGQMPSG
GQGGPPSGGDGGQGGPGGDGGKGGTGTGSKMQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERR
RLSVEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRNQTGWKAWLLPGAIIATTGFELF
ILRNYNDQIGVGWSIGVGVIGVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPMYWASTPLLYGGNSSLPETGPQLASM
SGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPAITLTQFKKLVKEGKVKYF
LASGMGRGGNNDIVEWVEKNGKEVASEKWQSSSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE

Sequences:

>Translated_716_residues
MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSMMQSFHNFFYASFDAAGFITVDKPPVTYQIQTISALI
FGMHGWSVILPQALAGVGSVLLMYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKG
KLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGS
SQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSDGKSSNGNMAAPPSNGQMPSG
GQGGPPSGGDGGQGGPGGDGGKGGTGTGSKMQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERR
RLSVEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRNQTGWKAWLLPGAIIATTGFELF
ILRNYNDQIGVGWSIGVGVIGVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPMYWASTPLLYGGNSSLPETGPQLASM
SGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPAITLTQFKKLVKEGKVKYF
LASGMGRGGNNDIVEWVEKNGKEVASEKWQSSSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE
>Mature_716_residues
MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSMMQSFHNFFYASFDAAGFITVDKPPVTYQIQTISALI
FGMHGWSVILPQALAGVGSVLLMYLLIKPTFGKTAARIASFVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKG
KLIWLLAAFFVVGVGFNTKMLQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGS
SQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSDGKSSNGNMAAPPSNGQMPSG
GQGGPPSGGDGGQGGPGGDGGKGGTGTGSKMQSGSGMFGTGTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERR
RLSVEQKETVFWVAWLVPIAGFFSVAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRNQTGWKAWLLPGAIIATTGFELF
ILRNYNDQIGVGWSIGVGVIGVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPMYWASTPLLYGGNSSLPETGPQLASM
SGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAPYIIKTKKAVMAIGGYSGSDPAITLTQFKKLVKEGKVKYF
LASGMGRGGNNDIVEWVEKNGKEVASEKWQSSSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKCB_BACSU (O34575)

Other databases:

- EMBL:   AJ002571
- EMBL:   AL009126
- PIR:   D69855
- RefSeq:   NP_389171.2
- EnsemblBacteria:   EBBACT00000003404
- GeneID:   939775
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU12880
- NMPDR:   fig|224308.1.peg.1290
- GenoList:   BSU12880
- GeneTree:   EBGT00050000000313
- HOGENOM:   HBG482136
- ProtClustDB:   CLSK887149
- BioCyc:   BSUB:BSU12880-MONOMER
- InterPro:   IPR003342

Pfam domain/function: PF02366 PMT

EC number: NA

Molecular weight: Translated: 76343; Mature: 76343

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xde63880)-; HASH(0xe2ff324)-; HASH(0xb4a2548)-; HASH(0xe50da98)-; HASH(0xe80d300)-; HASH(0xe21c974)-; HASH(0xb4a25fc)-; HASH(0xca9f7c4)-; HASH(0xd33dbb8)-; HASH(0xe827cf4)-; HASH(0xe3e9538)-; HASH(0xe7022b4)-; HASH(0xe4ef8e8)-; HASH(0xdc07fe8)-;

Cys/Met content:

0.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSMMQSFHNFFYASFDAAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCE
FITVDKPPVTYQIQTISALIFGMHGWSVILPQALAGVGSVLLMYLLIKPTFGKTAARIAS
EEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKGKLIWLLAAFFVVGVGFNTKM
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
LQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
SQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSD
CCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
GKSSNGNMAAPPSNGQMPSGGQGGPPSGGDGGQGGPGGDGGKGGTGTGSKMQSGSGMFGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERRRLSVEQKETVFWVAWLVPIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHH
GFFSVAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRNQTGWKAWLLPGAIIATTGFELF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHEECCCEEEE
ILRNYNDQIGVGWSIGVGVIGVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPMYWAST
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PLLYGGNSSLPETGPQLASMSGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAA
CEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PYIIKTKKAVMAIGGYSGSDPAITLTQFKKLVKEGKVKYFLASGMGRGGNNDIVEWVEKN
CEEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHC
GKEVASEKWQSSSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH
>Mature Secondary Structure
MEKKKRELDIVLLLILLASAFLNIYNIWKDDTVNPYYTAAVTSMMQSFHNFFYASFDAAG
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCE
FITVDKPPVTYQIQTISALIFGMHGWSVILPQALAGVGSVLLMYLLIKPTFGKTAARIAS
EEEECCCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
FVMACTPIAVAVARTNNVDALLVFFLLLATWLLFKAIRKGKLIWLLAAFFVVGVGFNTKM
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHH
LQAYMILPAFLLFYLIAANATIKKKIVSLVSALAVLAAVSLSWPLIVDNIPASKRPYIGS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
SQTNSVLELAFGYNGIQRLTGQNSGGGQGAPNKDASKEMSSSDNTQAPPNQSSSNSSSSD
CCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
GKSSNGNMAAPPSNGQMPSGGQGGPPSGGDGGQGGPGGDGGKGGTGTGSKMQSGSGMFGT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GTPGPLRLFQQELSDQISWLLPFAIFGIAGLLIAGARERRRLSVEQKETVFWVAWLVPIA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHH
GFFSVAEFFHHYYLIMLAPPIAALVGAGWVALVHLYRNQTGWKAWLLPGAIIATTGFELF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHEECCCEEEE
ILRNYNDQIGVGWSIGVGVIGVLSAIALLLFKQRQKPFSYYVSLAALLALLVMPMYWAST
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
PLLYGGNSSLPETGPQLASMSGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAA
CEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
PYIIKTKKAVMAIGGYSGSDPAITLTQFKKLVKEGKVKYFLASGMGRGGNNDIVEWVEKN
CEEEECCCEEEEECCCCCCCCCEEHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHC
GKEVASEKWQSSSDQKTENTDSADTSSSKASGENGKMGGPGGMNQSATLYELHADE
CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377