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The map label for this gene is yhcJ

Identifier: 255767210

GI number: 255767210

Start: 984901

End: 985731

Strand: Direct

Name: yhcJ

Synonym: BSU09110

Alternate gene names: 255767210

Gene position: 984901-985731 (Clockwise)

Preceding gene: 16077974

Following gene: 16077978

Centisome position: 23.36

GC content: 43.92

Gene sequence:

>831_bases
ATGAAAAAGTGGCTTATATGCAGTTTCGTCCTTGTTCTTCTCGTTTCATTTACTGCATGTTCACCGTCTGCAGAACATGA
ATCGATAAAAATCGGGATTGCTGAGTCTGACGGGGCAATATGGAACTATATTGCTCAAAAGGCTGAAGAGGCAGGGCTGG
ATATTCAGCTGATCCCTTTTTCTGATTATGCGGAGTCTGATATCGCACTTGCTAACAAAGAAATTGATGCCAACGCCTTT
CAAACCATTTCATATTTTCAGTCGTTCACTGAAAAATACAAACTTAATTTGGCACCGCTCGGGACGACATACATAACGCC
CATGGGCATTTATTCAAAACGATATGAACGAATCCGAGATATATCGCGGGGAGCTGTCGTTTCTGTTCCGGATAAAGCGT
TCGATTTTGGCAGGGCGCTTACGGTGCTCCAGGAAGCGGGTTTGCTAACGCTGAAAAACGGATTTAACGGAACAGGTTCA
GTTGATATGATTAAAGATAATCCGAGACACCTGAAATTAAAAGCTGTCCGGCAACAGGATGCAGTGAGCGGTGCCGACGT
GTTTGTCATGAAACCATCAGAAGCAAAAAAAGCGGGCTTGAACCCGAAAAAGCATACGCTAAAGAGCGGCGGACTCATGT
CTGAGGAAGAGATGAATTTGATTGTTGTCAGAGCGGAGGATCAAGATCGGGAAGCGCTGCAAACCATTCTTGAGCTTTAT
CAAGCTGATGATACAGCGGCATTTATAGAAAAAGAATATCAGGGAGATCTTGTCCCGGCTTTTCTGCCTTTGAAACGTCT
TTCAGATTGGAAGAATGAATTCGAACATTGA

Upstream 100 bases:

>100_bases
CAATATTACAAATGACAACGTTTATCAACTAAGAGAGCGTATGATTTTTATGTCTGATATTGCTTGCATGCTCTAATACA
TAGATAGGAGTATGGTCACA

Downstream 100 bases:

>100_bases
ATTCATTCTTTTTTTTCTGAAAAACACACTCTGTTCCGTCCCGTTTCTTTCGCTTTGTAAAGCATTTGATCGGCAAGAAT
GGGCAAGGATCCTGGCTGTT

Product: ABC transporter binding lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAEEAGLDIQLIPFSDYAESDIALANKEIDANAF
QTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGS
VDMIKDNPRHLKLKAVRQQDAVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEMNLIVVRAEDQDREALQTILELY
QADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH

Sequences:

>Translated_276_residues
MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAEEAGLDIQLIPFSDYAESDIALANKEIDANAF
QTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGS
VDMIKDNPRHLKLKAVRQQDAVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEMNLIVVRAEDQDREALQTILELY
QADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH
>Mature_276_residues
MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAEEAGLDIQLIPFSDYAESDIALANKEIDANAF
QTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGS
VDMIKDNPRHLKLKAVRQQDAVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEMNLIVVRAEDQDREALQTILELY
QADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family

Homologues:

Organism=Escherichia coli, GI1786396, Length=241, Percent_Identity=30.2904564315353, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790093, Length=252, Percent_Identity=29.3650793650794, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHCJ_BACSU (P54594)

Other databases:

- EMBL:   X96983
- EMBL:   U58859
- EMBL:   AL009126
- PIR:   F69822
- RefSeq:   NP_388792.2
- ProteinModelPortal:   P54594
- SMR:   P54594
- EnsemblBacteria:   EBBACT00000001728
- GeneID:   939261
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU09110
- NMPDR:   fig|224308.1.peg.911
- GenoList:   BSU09110
- GeneTree:   EBGT00070000032120
- HOGENOM:   HBG661773
- ProtClustDB:   CLSK886935
- BioCyc:   BSUB:BSU09110-MONOMER
- InterPro:   IPR004872

Pfam domain/function: PF03180 Lipoprotein_9

EC number: NA

Molecular weight: Translated: 30763; Mature: 30763

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAEEAGLDIQLIPF
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
SDYAESDIALANKEIDANAFQTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRD
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHCCCCHHHHHHHHHHHH
ISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGSVDMIKDNPRHLKLKAVRQQD
HCCCCEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCEEEEEEHHHHC
AVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEMNLIVVRAEDQDREALQTILELY
CCCCCEEEEECCCHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKWLICSFVLVLLVSFTACSPSAEHESIKIGIAESDGAIWNYIAQKAEEAGLDIQLIPF
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
SDYAESDIALANKEIDANAFQTISYFQSFTEKYKLNLAPLGTTYITPMGIYSKRYERIRD
CCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHEEEEEECCCHHCCCCHHHHHHHHHHHH
ISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKNGFNGTGSVDMIKDNPRHLKLKAVRQQD
HCCCCEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCCCEEEEEEHHHHC
AVSGADVFVMKPSEAKKAGLNPKKHTLKSGGLMSEEEMNLIVVRAEDQDREALQTILELY
CCCCCEEEEECCCHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
QADDTAAFIEKEYQGDLVPAFLPLKRLSDWKNEFEH
HCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377