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The map label for this gene is ygzD

Identifier: 255767206

GI number: 255767206

Start: 966671

End: 966871

Strand: Reverse

Name: ygzD

Synonym: BSU08899

Alternate gene names: 255767206

Gene position: 966871-966671 (Counterclockwise)

Preceding gene: 16077955

Following gene: 16077954

Centisome position: 22.94

GC content: 44.28

Gene sequence:

>201_bases
ATGAAAAATAAAGTAAAAGAGCTGAGGGCACGCTTCGGCTATTCTCAGGAAAAACTCGGAGAAACGGTCGGCGTCACAAG
ACAGACTGTGGCAGCGATTGAAAAAGGCGATTATGTTCCCTCACTGCTGTTAGCACTGAAAATCTGCAAAGCCTTCTCCA
TGAAAATGGAGGATGTCTTTTGGTTAGAGGAGGAAAACTAA

Upstream 100 bases:

>100_bases
AAAAGTTATCTTTTTGTAAAGTTGTTAAGTTCCATTTACATAATGTTAAGTATACTATACAATATAATCAATCGAGATTG
TGAAGGGGACAGACGTCATG

Downstream 100 bases:

>100_bases
GATGAGCATGAAAACAAAAGCAGCTTTTCACCTTGTTTTATTTGGCCTTGCATGCTGGGCGCTGATTTCATACTTTGAAG
CCTCAGAAGGCATAGCATCT

Product: HTH-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLLALKICKAFSMKMEDVFWLEEEN

Sequences:

>Translated_66_residues
MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLLALKICKAFSMKMEDVFWLEEEN
>Mature_66_residues
MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLLALKICKAFSMKMEDVFWLEEEN

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGZD_BACSU (C0H3X9)

Other databases:

- EMBL:   AL009126
- RefSeq:   YP_003097697.1
- ProteinModelPortal:   C0H3X9
- SMR:   C0H3X9
- EnsemblBacteria:   EBBACT00000082723
- GeneID:   8303098
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08899
- GenoList:   BSU08899
- GeneTree:   EBGT00070000031944
- ProtClustDB:   CLSK2765255
- BioCyc:   BSUB:BSU08899-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 7569; Mature: 7569

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLLALKICKAFSMKMEDVF
CCHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHE
WLEEEN
EEECCC
>Mature Secondary Structure
MKNKVKELRARFGYSQEKLGETVGVTRQTVAAIEKGDYVPSLLLALKICKAFSMKMEDVF
CCHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHE
WLEEEN
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377