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The map label for this gene is ygaC

Identifier: 255767196

GI number: 255767196

Start: 938731

End: 939261

Strand: Direct

Name: ygaC

Synonym: BSU08680

Alternate gene names: 255767196

Gene position: 938731-939261 (Clockwise)

Preceding gene: 16077933

Following gene: 16077935

Centisome position: 22.27

GC content: 41.43

Gene sequence:

>531_bases
ATGGGCTATCCCAAGGAAGGAGAAACCATTCAAATTCACAGCTATAAGCACAACGGGCTGATTCATAGAATTTGGAATGA
GACAACAATCTTAAAAAGTACAGAAATGTGTGTCATCGGAGCCAATGACCGGACGATGGTAACCGAATCAGACGGCCGGA
CATGGATAACCAGAGAGCCCGCAATCTGTTATTTTCACGCAAGACAATGGTTTAATGTCATCGGGATGCTGAGGGAAGAC
GGGGTTCATTATTATTGCAACATCAGTTCTCCGTTTGCCTATGATGGCGAAGCAATTAAATATATTGATTATGACTTAGA
TGTTAAGGTTTTTCCTGACATGACCTACAATATTCTCGATGAAGACGAATATGATGATCATCGGAAAGCCATGAATTATC
CAAAAGAAATCGACAGTATTTTAAGAGACTACTTAAATACGCTGCTCCATTGGATTCACCAGCGTCAGGGACCGTTTGCG
CCCGAGTTTGTCGATATGTGGTATGAACGGTATTTGCGCTATACAAAATAA

Upstream 100 bases:

>100_bases
TCATTTTTCAATTTGTAACGTTATAATAGGTAAAAGACGTTGTCGGTAAGCAAATTTGGACATACTAACTGTAGGGCTTT
ATAGAAAGTAGGGGAGAAAT

Downstream 100 bases:

>100_bases
TGGTTACGTAAAAACCTGTTGCGGGGTACAACAGGTTTTTCACATGGGCTCACACACATCATGATAAAGAGAGAGGGGGA
ATCAACCGTGGGGGTTATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREPAICYFHARQWFNVIGMLRED
GVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFA
PEFVDMWYERYLRYTK

Sequences:

>Translated_176_residues
MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREPAICYFHARQWFNVIGMLRED
GVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFA
PEFVDMWYERYLRYTK
>Mature_175_residues
GYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREPAICYFHARQWFNVIGMLREDG
VHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILDEDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFAP
EFVDMWYERYLRYTK

Specific function: Unknown

COG id: COG3557

COG function: function code J; Uncharacterized domain/protein associated with RNAses G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0374 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGAC_BACSU (Q796Z1)

Other databases:

- EMBL:   Z82044
- EMBL:   AL009126
- PIR:   F69815
- RefSeq:   NP_388748.3
- ProteinModelPortal:   Q796Z1
- EnsemblBacteria:   EBBACT00000002428
- GeneID:   936192
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU08680
- GenoList:   BSU08680
- GeneTree:   EBGT00050000002708
- HOGENOM:   HBG288296
- ProtClustDB:   PRK13662
- BioCyc:   BSUB:BSU08680-MONOMER
- HAMAP:   MF_01568
- InterPro:   IPR007295
- InterPro:   IPR016882
- PIRSF:   PIRSF028345

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 21140; Mature: 21009

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREP
CCCCCCCCEEEEEEECCCCEEEEECCCEEEEECCCEEEEECCCCEEEEECCCCEEEECCC
AICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILD
CEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCEEEECC
EDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFAPEFVDMWYERYLRYTK
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GYPKEGETIQIHSYKHNGLIHRIWNETTILKSTEMCVIGANDRTMVTESDGRTWITREP
CCCCCCCEEEEEEECCCCEEEEECCCEEEEECCCEEEEECCCCEEEEECCCCEEEECCC
AICYFHARQWFNVIGMLREDGVHYYCNISSPFAYDGEAIKYIDYDLDVKVFPDMTYNILD
CEEEEHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCEEECCCCEEEECC
EDEYDDHRKAMNYPKEIDSILRDYLNTLLHWIHQRQGPFAPEFVDMWYERYLRYTK
CCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202460; 9384377