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The map label for this gene is ydiF

Identifier: 255767153

GI number: 255767153

Start: 644528

End: 646456

Strand: Reverse

Name: ydiF

Synonym: BSU05950

Alternate gene names: 255767153

Gene position: 646456-644528 (Counterclockwise)

Preceding gene: 16077667

Following gene: 50812189

Centisome position: 15.33

GC content: 43.23

Gene sequence:

>1929_bases
ATGATGATCTTACAAGTTAATCAGCTGTCCAAATCATTTGGTGCTGATACTATTTTAAACAATATAAAGCTGGAAGTCAG
AAATCGTGATCGCATCGCCATTGTAGGAAGAAATGGCGCCGGAAAATCCACGCTCCTTAAAATTATCGCAGGCCAGCTTT
CGTATGAAAAGGGCGAAATTATTAAACCGAAAGATATTACAATGGGATATCTCGCCCAGCATACTGGCTTGGATTCTAAG
CTTACCATAAAAGAAGAGCTGCTGACTGTTTTTGACCACTTAAAAGCAATGGAAAAGGAAATGCGGGCTATGGAAGAAAA
AATGGCGGCAGCTGACCCGGGTGAATTAGAAAGCATCATGAAAACCTACGACCGTCTTCAGCAGGAATTCAAAGATAAAG
GCGGTTATCAATATGAAGCGGATGTTAGATCTGTGCTGCATGGTCTCGGCTTCAGCCATTTTGACGATTCTACACAGGTT
CAAAGCCTCAGCGGAGGCCAGAAAACAAGACTGGCTTTAGGTAAGCTTCTATTAACACAGCCTGATTTGCTCATTCTTGA
TGAGCCGACAAACCATCTGGATATTGATACGCTTACCTGGCTTGAGCATTATTTACAAGGCTATTCAGGCGCCATTCTCA
TCGTTTCGCATGACCGCTACTTTTTGGACAAAGTAGTAAACCAGGTATACGAGGTATCAAGAGCAGAAAGCAAAAAGTAT
CACGGCAACTACAGCGCTTATCTCGACCAAAAAGCCGCGCAGTATGAAAAAGATCTGAAAATGTATGAAAAGCAGCAGGA
CGAGATTGCAAAGCTGCAGGACTTCGTAGATCGAAATCTGGCGAGAGCCTCTACCACCAAAAGGGCGCAAAGCCGCAGAA
AGCAGCTTGAGCGAATGGATGTCATGTCAAAACCGCTTGGCGATGAAAAATCCGCAAACTTTCATTTTGATATTACAAAA
CAGAGCGGAAATGAAGTCCTTCGTGTTCAGGATCTCACAATCAGCTATGAAAACCAGCCGCCGCTTTTAACAGAAGTGTC
ATTCATGCTCACAAGAGGAGAAAGCGCTGCGCTTGTCGGCCCTAACGGAATAGGTAAATCGACATTGCTGAAAACATTAA
TAGACACCCTAAAACCAGATCAGGGAACAATTTCTTACGGCTCAAATGTCAGTGTCGGCTATTATGACCAGGAACAGGCT
GAGTTGACTTCCTCTAAACGTGTCCTTGATGAGCTGTGGGACGAGTACCCCGGGCTCCCAGAAAAAGAAATCAGAACGTG
TCTCGGAAATTTCTTATTCTCCGGAGATGATGTGCTGAAACCAGTTCATTCACTGAGCGGAGGCGAAAAAGCAAGATTGG
CTCTAGCTAAGCTGATGCTTCAAAAAGCCAACTTTCTCATCCTTGATGAACCGACGAACCATCTGGATTTAGACAGCAAA
GAAGTTCTCGAAAACGCGCTGATTGATTATCCAGGCACACTGTTATTTGTCTCACATGACAGATATTTTATTAACAGAAT
CGCCACAAGAGTATTGGAGCTTTCTTCAAGCCATATAGAGGAGTATCTGGGAGATTACGATTATTATACAGAGAAAAAAA
CAGAGCAGCTTGAATTGGAGAAAATGAATCAGCAAGAGGAAACTGATAAAACGCCAGCTACAGTGAAGTCTGACTCCAAA
CGTTCCTACGAGGAAGAAAAAGAATGGAAAAAGAAAGAGCGCCAACGACTCCGTCGGATTGAAGAAATTGAAACCACCGT
TCAAACCATTGAGGAGAACATCAGCCGCAATGATGAATTGCTATGTGACCCTGAAGTCTATCAGGATCATGAAAAAGTAC
AAGCTATCCATGCAGACAATGAGAAGCTTAATCAGGAGCTGGAATCTCTTTTGTCCGAATGGGAAGAACTATCCACAGAA
GAAGATTAA

Upstream 100 bases:

>100_bases
TACACTATTTTCTTCTCTATGTCTTATATGGCCAATGTATTGTTTGCTGACTTCTGGTTCATAAGCTACACTTAACTTAT
TATAGCAGAGGTGAAATAAT

Downstream 100 bases:

>100_bases
AAAAGTCAAGCACCTCTTTTTAGAGGTGCTTTTTATCCACAGAACATCCCCTAATAAATAAACAAAGTAAGCGCTTTATA
CACACTATCCACAAAATATT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 642; Mature: 642

Protein sequence:

>642_residues
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSK
LTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY
HGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITK
QSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQA
ELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSK
RSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTE
ED

Sequences:

>Translated_642_residues
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSK
LTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY
HGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITK
QSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQA
ELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSK
RSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTE
ED
>Mature_642_residues
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPKDITMGYLAQHTGLDSK
LTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQV
QSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY
HGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMDVMSKPLGDEKSANFHFDITK
QSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQA
ELTSSKRVLDELWDEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSK
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELEKMNQQEETDKTPATVKSDSK
RSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDELLCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTE
ED

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains

Homologues:

Organism=Homo sapiens, GI148612853, Length=543, Percent_Identity=31.4917127071823, Blast_Score=268, Evalue=1e-71,
Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=32.5233644859813, Blast_Score=266, Evalue=5e-71,
Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=32.5233644859813, Blast_Score=265, Evalue=8e-71,
Organism=Homo sapiens, GI10947135, Length=556, Percent_Identity=29.8561151079137, Blast_Score=224, Evalue=2e-58,
Organism=Homo sapiens, GI69354671, Length=556, Percent_Identity=29.8561151079137, Blast_Score=224, Evalue=2e-58,
Organism=Escherichia coli, GI1789751, Length=625, Percent_Identity=32, Blast_Score=324, Evalue=9e-90,
Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=35.2059925093633, Blast_Score=323, Evalue=2e-89,
Organism=Escherichia coli, GI2367384, Length=541, Percent_Identity=34.5656192236599, Blast_Score=300, Evalue=3e-82,
Organism=Escherichia coli, GI1787182, Length=665, Percent_Identity=31.1278195488722, Blast_Score=281, Evalue=8e-77,
Organism=Escherichia coli, GI1788165, Length=181, Percent_Identity=30.939226519337, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788761, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=25, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788506, Length=240, Percent_Identity=26.25, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787029, Length=241, Percent_Identity=25.3112033195021, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=26.3392857142857, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=26.0683760683761, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI48995001, Length=249, Percent_Identity=29.3172690763052, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787500, Length=241, Percent_Identity=23.2365145228216, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=541, Percent_Identity=31.0536044362292, Blast_Score=256, Evalue=2e-68,
Organism=Caenorhabditis elegans, GI17553372, Length=536, Percent_Identity=31.9029850746269, Blast_Score=248, Evalue=7e-66,
Organism=Caenorhabditis elegans, GI17559834, Length=519, Percent_Identity=30.2504816955684, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI212646699, Length=257, Percent_Identity=28.7937743190661, Blast_Score=79, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6321121, Length=535, Percent_Identity=32.1495327102804, Blast_Score=251, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6320874, Length=544, Percent_Identity=30.6985294117647, Blast_Score=242, Evalue=1e-64,
Organism=Saccharomyces cerevisiae, GI6325030, Length=392, Percent_Identity=29.0816326530612, Blast_Score=139, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=392, Percent_Identity=27.0408163265306, Blast_Score=122, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6323278, Length=392, Percent_Identity=25.2551020408163, Blast_Score=120, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24666836, Length=545, Percent_Identity=32.6605504587156, Blast_Score=281, Evalue=9e-76,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=31.1926605504587, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=31.1926605504587, Blast_Score=266, Evalue=3e-71,
Organism=Drosophila melanogaster, GI24641342, Length=539, Percent_Identity=31.7254174397032, Blast_Score=263, Evalue=2e-70,
Organism=Drosophila melanogaster, GI116007184, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221500365, Length=220, Percent_Identity=26.8181818181818, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YDIF_BACSU (O05519)

Other databases:

- EMBL:   D88802
- EMBL:   AL009126
- PIR:   G69786
- RefSeq:   NP_388476.2
- ProteinModelPortal:   O05519
- EnsemblBacteria:   EBBACT00000001843
- GeneID:   938013
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU05950
- NMPDR:   fig|224308.1.peg.595
- GenoList:   BSU05950
- GeneTree:   EBGT00070000031849
- HOGENOM:   HBG758042
- PhylomeDB:   O05519
- ProtClustDB:   CLSK886800
- BioCyc:   BSUB:BSU05950-MONOMER
- GO:   GO:0006810
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- SMART:   SM00382

Pfam domain/function: PF00005 ABC_tran

EC number: NA

Molecular weight: Translated: 73483; Mature: 73483

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEI
CEEEEEHHHHHHHCHHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
IKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIM
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQ
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
PDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVG
HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEC
PNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYPGLP
CCCCCHHHHHHHHHHHHCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSK
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELE
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
KMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDEL
HHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTEED
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEI
CEEEEEHHHHHHHCHHHHHHCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
IKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIM
CCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQ
HHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
PDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY
CCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
HGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLERMD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAALVG
HHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEC
PNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYPGLP
CCCCCHHHHHHHHHHHHCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
EKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDLDSK
HHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHH
EVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTEQLELE
HHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHH
KMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQRLRRIEEIETTVQTIEENISRNDEL
HHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
LCDPEVYQDHEKVQAIHADNEKLNQELESLLSEWEELSTEED
EECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377