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The map label for this gene is ydcR [C]

Identifier: 239618525

GI number: 239618525

Start: 2296730

End: 2297962

Strand: Reverse

Name: ydcR [C]

Synonym: Kole_2166

Alternate gene names: 239618525

Gene position: 2297962-2296730 (Counterclockwise)

Preceding gene: NA

Following gene: 239618524

Centisome position: 99.82

GC content: 42.74

Gene sequence:

>1233_bases
ATGAAAGATTATAAATTTTCGAGTACAGCGCTGCGAATGAAGTCATCCATTATCCGTGAACTCTTAAAGGAAGCCATGAA
CCCGGGAATGATTTCTTTTGGCGGGGGGGTTCCTGATCCTGAAACCTTTCCACGCGAAGAACTTGCAAAGGTTGCCGATA
AAGTGATAAGAGAGGAATATAGCCACTCTCTTCAATATTGCCCTACAGAAGGAGATTCTGTCTTAAGAGAGGCCTATCTC
AAATATCTCGAAAGGGCAGAGGGAATTACAGGGTTGAATCTCGATAACATTATAGTCACGGTGGGATCTCAAAGCGCCTT
GCATCTAATCTCTGAAATCCTTCTTGACGAGGATAGCATATATTTTGTTTCAAAACCAATATATCTGGGAGCTGCAAGCG
CTTTTGCACTGCGGTCATTGAATCACGAAGATCTTGAACTTCAAGACGATGGGATCGATCTGGATAGATTAGAAAAGCGG
TTAGCCGAAATTGAAAAGGCCGGAGAGATGGACAAAGTTAAATTCATATACGTCATTCCAAACTTCCACAATCCAGCCGG
CGTTAGTCTAAGCCTTGAGAAAAGGAAAAGGTTGATCGAGATAGCTGAAAAATACGATCTTTTAATAATTGAAGATGATC
CATACGGTGAACTTCGCTATGAAGGTGAACATATCCCCTCGTTGTTCAAACTCGCCGGTAAAGAAAGGGTCCTGATGTTC
AGAACCTTCAGTAAGGTTTTGTCCCCTGGAATGAGAATAGGTCTGGTGGTAGGCCACGAGAATCTTGTGAGAAAGGTTAC
CCAGGCAAAGCAAGCAGCCGATCTTTGTTCACCAAGTCTCACTCAGAGAATCGCCGGACGATATCTTGAACAATATGACC
TCAGAGAATCACTCAAACCCACCATCGCCTTGTATAAAAAGAAGATGAAGCTTATGCTTGATGAACTTGAAAAGGACTTC
TCAGATATACCGGGAGTTAAATGGACAAAACCTTCCGGCGGCCTTTTCATCTGGCTCTGTTTACCAGAGGGCTTCAATAC
ACTTGAAATGATGGAATACGGTAAGAAAAACGGTGTCCTCTTTATACCCGGTGTGGCTTTTACGATAGATAACTCCTGTG
AAAACTGCATGAGACTCTCTTTCTGTTTGCCTCCTGAGAAGGAAATCATAGAAGGAGTTGCCAGGCTTAAGAAAACTGTT
CTCGAATACGGAAAAATGAAAGGTTTACTGTAA

Upstream 100 bases:

>100_bases
TTTGAAGGTTATACCTTGTTTTTTTCAAGATGGCATTGAATTGCTTTACTATTATATGAATCATTGTGCCAATAATAATA
ATATTTTAGGGGGTGAGTAC

Downstream 100 bases:

>100_bases
GAGGTGATTTTATGCCCAGAATATTGATTATAAACCCGGGTTCCACTTCAACGAAACTTGGTATCTATGAAAACGATGAG
ATCATCTGGAAAGAGAATTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MKDYKFSSTALRMKSSIIRELLKEAMNPGMISFGGGVPDPETFPREELAKVADKVIREEYSHSLQYCPTEGDSVLREAYL
KYLERAEGITGLNLDNIIVTVGSQSALHLISEILLDEDSIYFVSKPIYLGAASAFALRSLNHEDLELQDDGIDLDRLEKR
LAEIEKAGEMDKVKFIYVIPNFHNPAGVSLSLEKRKRLIEIAEKYDLLIIEDDPYGELRYEGEHIPSLFKLAGKERVLMF
RTFSKVLSPGMRIGLVVGHENLVRKVTQAKQAADLCSPSLTQRIAGRYLEQYDLRESLKPTIALYKKKMKLMLDELEKDF
SDIPGVKWTKPSGGLFIWLCLPEGFNTLEMMEYGKKNGVLFIPGVAFTIDNSCENCMRLSFCLPPEKEIIEGVARLKKTV
LEYGKMKGLL

Sequences:

>Translated_410_residues
MKDYKFSSTALRMKSSIIRELLKEAMNPGMISFGGGVPDPETFPREELAKVADKVIREEYSHSLQYCPTEGDSVLREAYL
KYLERAEGITGLNLDNIIVTVGSQSALHLISEILLDEDSIYFVSKPIYLGAASAFALRSLNHEDLELQDDGIDLDRLEKR
LAEIEKAGEMDKVKFIYVIPNFHNPAGVSLSLEKRKRLIEIAEKYDLLIIEDDPYGELRYEGEHIPSLFKLAGKERVLMF
RTFSKVLSPGMRIGLVVGHENLVRKVTQAKQAADLCSPSLTQRIAGRYLEQYDLRESLKPTIALYKKKMKLMLDELEKDF
SDIPGVKWTKPSGGLFIWLCLPEGFNTLEMMEYGKKNGVLFIPGVAFTIDNSCENCMRLSFCLPPEKEIIEGVARLKKTV
LEYGKMKGLL
>Mature_410_residues
MKDYKFSSTALRMKSSIIRELLKEAMNPGMISFGGGVPDPETFPREELAKVADKVIREEYSHSLQYCPTEGDSVLREAYL
KYLERAEGITGLNLDNIIVTVGSQSALHLISEILLDEDSIYFVSKPIYLGAASAFALRSLNHEDLELQDDGIDLDRLEKR
LAEIEKAGEMDKVKFIYVIPNFHNPAGVSLSLEKRKRLIEIAEKYDLLIIEDDPYGELRYEGEHIPSLFKLAGKERVLMF
RTFSKVLSPGMRIGLVVGHENLVRKVTQAKQAADLCSPSLTQRIAGRYLEQYDLRESLKPTIALYKKKMKLMLDELEKDF
SDIPGVKWTKPSGGLFIWLCLPEGFNTLEMMEYGKKNGVLFIPGVAFTIDNSCENCMRLSFCLPPEKEIIEGVARLKKTV
LEYGKMKGLL

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=375, Percent_Identity=28.8, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI33469970, Length=375, Percent_Identity=28.8, Blast_Score=149, Evalue=3e-36,
Organism=Escherichia coli, GI1787710, Length=396, Percent_Identity=27.020202020202, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1790797, Length=389, Percent_Identity=23.3933161953728, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1788722, Length=352, Percent_Identity=26.1363636363636, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788627, Length=321, Percent_Identity=22.7414330218069, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17567663, Length=343, Percent_Identity=22.7405247813411, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567369, Length=290, Percent_Identity=25.1724137931034, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6321000, Length=433, Percent_Identity=25.1732101616628, Blast_Score=100, Evalue=7e-22,
Organism=Saccharomyces cerevisiae, GI6321236, Length=487, Percent_Identity=20.9445585215606, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6321929, Length=296, Percent_Identity=22.972972972973, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21356535, Length=402, Percent_Identity=27.363184079602, Blast_Score=137, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 46393; Mature: 46393

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDYKFSSTALRMKSSIIRELLKEAMNPGMISFGGGVPDPETFPREELAKVADKVIREEY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
SHSLQYCPTEGDSVLREAYLKYLERAEGITGLNLDNIIVTVGSQSALHLISEILLDEDSI
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCE
YFVSKPIYLGAASAFALRSLNHEDLELQDDGIDLDRLEKRLAEIEKAGEMDKVKFIYVIP
EEEECCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
NFHNPAGVSLSLEKRKRLIEIAEKYDLLIIEDDPYGELRYEGEHIPSLFKLAGKERVLMF
CCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCHHHHHHCCCCHHHHH
RTFSKVLSPGMRIGLVVGHENLVRKVTQAKQAADLCSPSLTQRIAGRYLEQYDLRESLKP
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TIALYKKKMKLMLDELEKDFSDIPGVKWTKPSGGLFIWLCLPEGFNTLEMMEYGKKNGVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHCCCCCCEE
FIPGVAFTIDNSCENCMRLSFCLPPEKEIIEGVARLKKTVLEYGKMKGLL
EECCEEEEECCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDYKFSSTALRMKSSIIRELLKEAMNPGMISFGGGVPDPETFPREELAKVADKVIREEY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
SHSLQYCPTEGDSVLREAYLKYLERAEGITGLNLDNIIVTVGSQSALHLISEILLDEDSI
HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCE
YFVSKPIYLGAASAFALRSLNHEDLELQDDGIDLDRLEKRLAEIEKAGEMDKVKFIYVIP
EEEECCHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC
NFHNPAGVSLSLEKRKRLIEIAEKYDLLIIEDDPYGELRYEGEHIPSLFKLAGKERVLMF
CCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEECCCCCHHHHHHCCCCHHHHH
RTFSKVLSPGMRIGLVVGHENLVRKVTQAKQAADLCSPSLTQRIAGRYLEQYDLRESLKP
HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
TIALYKKKMKLMLDELEKDFSDIPGVKWTKPSGGLFIWLCLPEGFNTLEMMEYGKKNGVL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEECCCCCCHHHHHHCCCCCCEE
FIPGVAFTIDNSCENCMRLSFCLPPEKEIIEGVARLKKTVLEYGKMKGLL
EECCEEEEECCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]