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The map label for this gene is rbfA

Identifier: 239618462

GI number: 239618462

Start: 2232419

End: 2232796

Strand: Reverse

Name: rbfA

Synonym: Kole_2103

Alternate gene names: 239618462

Gene position: 2232796-2232419 (Counterclockwise)

Preceding gene: 239618463

Following gene: 239618461

Centisome position: 96.99

GC content: 38.1

Gene sequence:

>378_bases
ATGTCCGCAGGTTACAGAAAAGCGATGCTGGAATCGGAGATTCAAAAGGTTCTAACTGAAGCGCTTCGGAATTTCAAAGG
AGAAAGTGAAATAGATCCTACTTTGGTTTCTATCGTGAGAATCGAGCTTTCAAAAGACAAGCGTTACGCAAACATTTTTG
TTAGCTACCTTGGGAATGATGAAGAAAAGAAAAAAGCGGTGGAATTTATGGAGGAAAACAAGGGATACTTCAGGACAGCC
GTAGCGAAAAACATAAGGCTTTTTAAAGCTCCTGAGTTGAGATTTCATGAAGACATTGGCATAGAAGCGAGTTTACGAAT
ATCAAAAATACTTGAAGAAATCAAAAAACAAGAACAGGAAAAGGAAGAGAATGAATGA

Upstream 100 bases:

>100_bases
ATTCCTTAATTTAAACCTCCTTGATTGGGCATTAATGATTCGAAAATCAAGCCCCTTTGAAAGTAATGTATAATGATTAG
AGGTAGGGGAGGTGGAACGG

Downstream 100 bases:

>100_bases
ATTTGAACGGATTTCTTTTCATCGATAAACCTTCCGGGATTACTTCGCATGATGTTGTCGATGAAATCCGCAAGAAGTTT
GGAATAAAAAAGGTTGGGCA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MSAGYRKAMLESEIQKVLTEALRNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGNDEEKKKAVEFMEENKGYFRTA
VAKNIRLFKAPELRFHEDIGIEASLRISKILEEIKKQEQEKEENE

Sequences:

>Translated_125_residues
MSAGYRKAMLESEIQKVLTEALRNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGNDEEKKKAVEFMEENKGYFRTA
VAKNIRLFKAPELRFHEDIGIEASLRISKILEEIKKQEQEKEENE
>Mature_124_residues
SAGYRKAMLESEIQKVLTEALRNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGNDEEKKKAVEFMEENKGYFRTAV
AKNIRLFKAPELRFHEDIGIEASLRISKILEEIKKQEQEKEENE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_KOSOT (C5CI78)

Other databases:

- EMBL:   CP001634
- RefSeq:   YP_002941784.1
- GeneID:   7968515
- GenomeReviews:   CP001634_GR
- KEGG:   kol:Kole_2103
- ProtClustDB:   CLSK875427
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14588; Mature: 14457

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGYRKAMLESEIQKVLTEALRNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGND
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
EEKKKAVEFMEENKGYFRTAVAKNIRLFKAPELRFHEDIGIEASLRISKILEEIKKQEQE
HHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KEENE
HHCCC
>Mature Secondary Structure 
SAGYRKAMLESEIQKVLTEALRNFKGESEIDPTLVSIVRIELSKDKRYANIFVSYLGND
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCC
EEKKKAVEFMEENKGYFRTAVAKNIRLFKAPELRFHEDIGIEASLRISKILEEIKKQEQE
HHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
KEENE
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA