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The map label for this gene is yddE [C]

Identifier: 239618454

GI number: 239618454

Start: 2226471

End: 2227307

Strand: Reverse

Name: yddE [C]

Synonym: Kole_2095

Alternate gene names: 239618454

Gene position: 2227307-2226471 (Counterclockwise)

Preceding gene: 239618455

Following gene: 239618453

Centisome position: 96.75

GC content: 42.17

Gene sequence:

>837_bases
GTGCCGATGAAAATAGTGATTTTTCAGGTTGATGCCTTTACGAGAAAAGCTTATTCCGGAAATCCAGCCGCCGTGTGTGT
TTTGAAAAAACCTCTTTCTTCAAAAAATTATCTTGCTATAGCCAGAGAGATGAACTTTTCGGAAACAGCATTTGTGATTA
TGTCCAAAGAAGCGATGGATTCTGGTGTCTTTGAACTCAGATGGTTCACTCCACAGGTAGAAGTTCCTTTGTGCGGTCAT
GCTACCCTTGCTACGGCCTGGATACTGTTTTCTGAATACGGTTGTCGTGGAAAAATCCGTTTTAAAACACTCAGTGGTAT
CCATGAAGCAGAGCTTGTTTCTGATAGCGTAAGATTGAATTTCCCGCAGGATAAACCAATCCCGGTACCAATTCCTAAAG
GATTGAAAGAGGTCCTTGGATACTCAGAAAATATGAAAACCTTTTATGGTCAAAAAACCGCAAAGCTCCTTGTTGAATTC
GAACAAGCTTCTATTATCAGGGAATTAAAACCTGACTTTAAAAGGCTTCTCTCATTGAAAACTAATTACGAGATAAGAGG
GCTTATAGCAACCGCCAGAGGTAATGATGGATACGATATCGTATCAAGATACTTTGCACCGTGGGTAGGGATTGATGAGG
ATCCTGTAACCGGTTCAGCACACACTGTCCTGGGTCCTTTCTGGATGGAACGACTCGGAAAGAAAAAAATGCAGGCCTAT
CAGGCTTCTGAACGTGGTGGAGAACTCCTTCTTGAAATTACTGGAGGTGACAGGGTTTACATCACCGGGAATGCAGTAAC
GATTTTGAAAGGTACTCTGCTGAACGATTTTGCTTGA

Upstream 100 bases:

>100_bases
GCCAATTAACGTGCCTTTGGATTTTTTGGTCGAGACAGGATTAAAACCAATTCCTACGTTGACAGCGTATTTTGAGTTTT
GAACCTATATGAGGTGATAT

Downstream 100 bases:

>100_bases
TACCGAGGTGCCAATGAACCCCTTTTAACCTGTTATATTGGATGTGAATACTCTAAAGATATAGATAGGAGCGAGTATGA
TCAAAAGCTCTGAAATCATA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MPMKIVIFQVDAFTRKAYSGNPAAVCVLKKPLSSKNYLAIAREMNFSETAFVIMSKEAMDSGVFELRWFTPQVEVPLCGH
ATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSDSVRLNFPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAKLLVEF
EQASIIRELKPDFKRLLSLKTNYEIRGLIATARGNDGYDIVSRYFAPWVGIDEDPVTGSAHTVLGPFWMERLGKKKMQAY
QASERGGELLLEITGGDRVYITGNAVTILKGTLLNDFA

Sequences:

>Translated_278_residues
MPMKIVIFQVDAFTRKAYSGNPAAVCVLKKPLSSKNYLAIAREMNFSETAFVIMSKEAMDSGVFELRWFTPQVEVPLCGH
ATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSDSVRLNFPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAKLLVEF
EQASIIRELKPDFKRLLSLKTNYEIRGLIATARGNDGYDIVSRYFAPWVGIDEDPVTGSAHTVLGPFWMERLGKKKMQAY
QASERGGELLLEITGGDRVYITGNAVTILKGTLLNDFA
>Mature_277_residues
PMKIVIFQVDAFTRKAYSGNPAAVCVLKKPLSSKNYLAIAREMNFSETAFVIMSKEAMDSGVFELRWFTPQVEVPLCGHA
TLATAWILFSEYGCRGKIRFKTLSGIHEAELVSDSVRLNFPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAKLLVEFE
QASIIRELKPDFKRLLSLKTNYEIRGLIATARGNDGYDIVSRYFAPWVGIDEDPVTGSAHTVLGPFWMERLGKKKMQAYQ
ASERGGELLLEITGGDRVYITGNAVTILKGTLLNDFA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=43.3566433566434, Blast_Score=216, Evalue=2e-56,
Organism=Homo sapiens, GI74316009, Length=255, Percent_Identity=42.3529411764706, Blast_Score=185, Evalue=4e-47,
Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=27.5510204081633, Blast_Score=98, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=39.8089171974522, Blast_Score=191, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=39.8089171974522, Blast_Score=191, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17542158, Length=310, Percent_Identity=36.4516129032258, Blast_Score=169, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17542152, Length=310, Percent_Identity=36.4516129032258, Blast_Score=169, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6321818, Length=314, Percent_Identity=26.1146496815287, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31059; Mature: 30928

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMKIVIFQVDAFTRKAYSGNPAAVCVLKKPLSSKNYLAIAREMNFSETAFVIMSKEAMD
CCEEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEHHHHC
SGVFELRWFTPQVEVPLCGHATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSDSVRLN
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCEEEE
FPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAKLLVEFEQASIIRELKPDFKRLLSLK
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
TNYEIRGLIATARGNDGYDIVSRYFAPWVGIDEDPVTGSAHTVLGPFWMERLGKKKMQAY
CCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHEECHHHHHHHHHHHHHHH
QASERGGELLLEITGGDRVYITGNAVTILKGTLLNDFA
HHCCCCCEEEEEEECCCEEEEECCEEEEEEECHHHCCC
>Mature Secondary Structure 
PMKIVIFQVDAFTRKAYSGNPAAVCVLKKPLSSKNYLAIAREMNFSETAFVIMSKEAMD
CEEEEEEEECHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEHHHHC
SGVFELRWFTPQVEVPLCGHATLATAWILFSEYGCRGKIRFKTLSGIHEAELVSDSVRLN
CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCEEEE
FPQDKPIPVPIPKGLKEVLGYSENMKTFYGQKTAKLLVEFEQASIIRELKPDFKRLLSLK
CCCCCCCCCCCCHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
TNYEIRGLIATARGNDGYDIVSRYFAPWVGIDEDPVTGSAHTVLGPFWMERLGKKKMQAY
CCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHEECHHHHHHHHHHHHHHH
QASERGGELLLEITGGDRVYITGNAVTILKGTLLNDFA
HHCCCCCEEEEEEECCCEEEEECCEEEEEEECHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]