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The map label for this gene is gltD [H]

Identifier: 239618411

GI number: 239618411

Start: 2180578

End: 2182392

Strand: Reverse

Name: gltD [H]

Synonym: Kole_2051

Alternate gene names: 239618411

Gene position: 2182392-2180578 (Counterclockwise)

Preceding gene: 239618412

Following gene: 239618405

Centisome position: 94.8

GC content: 41.93

Gene sequence:

>1815_bases
ATGAATGCGAAAGAGATTTTCAAAAAAACCTTTTGGGGTCCAACTATCGCATGGAAATATCTATTTGCGAAACCTATAAC
CATTACAGTCCCCAAGGTCTATCGCGAAGCAGCCGAAAGATACCGGGGGTTTCATATAAACGATTGGGAACTATGTACTG
GTTGTGGAACCTGTTCGAAAATTTGCCCGACAGACGCTATAAAGATGATCCCTGTTGATATAGAAACAGAACCAGGTGAG
AAAGCAGAGAAACCTGCCATCGATTATGGGCGTTGTTCTTTTTGTGGAATGTGTGTTGATATATGTACCACCGGTTCTCT
GAAAATGACCAGGGAGTATATACATATCTCCGATAATCCAAATACGTTCTTTTTCATGCCGGAAAGCGATGGTATTCATC
ACAACAATTTTCCAATTGGCTACGTGCGTGATGAAGATTCCGAGTTGCTCGATCTTGAAAGGGTTGAAATGGAAGAGATT
CCTGGAGCAGAACGGGTTAACAGTTTTATAGAATTCGTAAAGGGATACTCCAAAGAACAGGCAATCGCAGAAGCCGCGAG
ATGTGTTGACTGCGAACTTTGTACGGATGTCTGTCCTGCACATATGGATATCCCGGAATACATCGAAACCGTGTTCAACG
ACGACCTTAAACGAGGTGTCGAGTGGATTTACAAAACCAATCCGCTTCCCGGTGTCTGTGGTAGGGTATGTACCCACAAC
TGTGAGGCCGTATGTTCCATAGGTCATAGAGGTGAAGCTGTTGCAATAAGATGGCTAAAACGCTATATTATCGATCAAAC
ACCTGTCGAAGAGATTAAAAAAGTAGCTAACGAAGAAATTATCAAAAAAGCCAACAAAAAAGTTGCAATTATCGGTTCTG
GTCCTTCCGGATTAGCAGCTGCATATTATCTTTCACTTATGGGATACAAAGTCACGATATTCGAAGCTAAACCAAAAGCT
GGTGGTGTCATGAGATACGGTATACCACGTTACCGTCTTCCTGATGAGGCCCTGGACAAGGATATCGAAGTGATTCAATC
TCTAGGAGTAGAAATTAAGTTAAATACAACTGTTGGAAAAGACGTAACCCTGGAGCAGTTGAAGAAAGAATATGATGCCG
TTTTCCTCGGTACTGGATTCACCATTGGAAAAAGTACAAAAATTCCAGGAACCGAACATGAAAAAGTTATTCAAGCTCTA
CCCCTCCTGGAAAAAATCAGGGATTATTTGCGTGGAGAAGGCGAGAAACCGGAGATTCCCAACAGTTTGATCGTTATAGG
CGGTGGAAATGTCGCAATGGACGTTGCCAGAAGCATGGCGAGACTTCAGAAAATGGAAGGAAAAGAAGTTAATGTTAAGG
TGGTATGCCTGGAAACCATGGAAGAAATGCCAGCAGATCTTGAAGAAATTGTAGAAGGAAAAGAAGAAGGAATTCTATTC
TTCCCCTCTCGAGGTCCTAGTGAAGTCATTGTAGAAAACGGAGAAATCAAAGGACTCAAAACAGTTTGCTGTACAAGTGT
TTTCGATGAGAATGGTAGATTTAACCCAACTTTCGATGAAAAAGACGTTATTATTATCGAGGGTGATATGATTGTAGAAG
CCATCGGTCAAGCTCCTGACTACAGCTATCTGCCAGAAGAACTTAAGAGTAAACTTGAATTCACGCGTGGAAGAATTCTA
GTGAATGAGTACGGTCAGACAAGTATTCCATGGCTTTTTGCTGGTGGTGATATCGTTCATGGCCCCGATATTATTAATGG
TATTGCAGATGGTCATAGAGCGGCTGAAGGTATTGATCGTTATTTGAACCAGTAA

Upstream 100 bases:

>100_bases
GAAAAGCTACTTCCGGGGACAAGAATCGAAGATGTGGCTCTCTGGTTAGGAACAATGGACTTCTGTCCACCGGAAATCGA
CAGATAAGGGAGGAGATGCG

Downstream 100 bases:

>100_bases
GTTAATGATAAAAAGCGCGCCAAAGGCGCGCTTTTTATTGGCTATAAAGGTGACATCTCACGGTTCGTGTATCACTGAGC
ATTACTTCTTCAGGCATTTC

Product: oxidoreductase

Products: NA

Alternate protein names: Glutamate synthase subunit beta; GLTS beta chain; NADPH-GOGAT [H]

Number of amino acids: Translated: 604; Mature: 604

Protein sequence:

>604_residues
MNAKEIFKKTFWGPTIAWKYLFAKPITITVPKVYREAAERYRGFHINDWELCTGCGTCSKICPTDAIKMIPVDIETEPGE
KAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIHISDNPNTFFFMPESDGIHHNNFPIGYVRDEDSELLDLERVEMEEI
PGAERVNSFIEFVKGYSKEQAIAEAARCVDCELCTDVCPAHMDIPEYIETVFNDDLKRGVEWIYKTNPLPGVCGRVCTHN
CEAVCSIGHRGEAVAIRWLKRYIIDQTPVEEIKKVANEEIIKKANKKVAIIGSGPSGLAAAYYLSLMGYKVTIFEAKPKA
GGVMRYGIPRYRLPDEALDKDIEVIQSLGVEIKLNTTVGKDVTLEQLKKEYDAVFLGTGFTIGKSTKIPGTEHEKVIQAL
PLLEKIRDYLRGEGEKPEIPNSLIVIGGGNVAMDVARSMARLQKMEGKEVNVKVVCLETMEEMPADLEEIVEGKEEGILF
FPSRGPSEVIVENGEIKGLKTVCCTSVFDENGRFNPTFDEKDVIIIEGDMIVEAIGQAPDYSYLPEELKSKLEFTRGRIL
VNEYGQTSIPWLFAGGDIVHGPDIINGIADGHRAAEGIDRYLNQ

Sequences:

>Translated_604_residues
MNAKEIFKKTFWGPTIAWKYLFAKPITITVPKVYREAAERYRGFHINDWELCTGCGTCSKICPTDAIKMIPVDIETEPGE
KAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIHISDNPNTFFFMPESDGIHHNNFPIGYVRDEDSELLDLERVEMEEI
PGAERVNSFIEFVKGYSKEQAIAEAARCVDCELCTDVCPAHMDIPEYIETVFNDDLKRGVEWIYKTNPLPGVCGRVCTHN
CEAVCSIGHRGEAVAIRWLKRYIIDQTPVEEIKKVANEEIIKKANKKVAIIGSGPSGLAAAYYLSLMGYKVTIFEAKPKA
GGVMRYGIPRYRLPDEALDKDIEVIQSLGVEIKLNTTVGKDVTLEQLKKEYDAVFLGTGFTIGKSTKIPGTEHEKVIQAL
PLLEKIRDYLRGEGEKPEIPNSLIVIGGGNVAMDVARSMARLQKMEGKEVNVKVVCLETMEEMPADLEEIVEGKEEGILF
FPSRGPSEVIVENGEIKGLKTVCCTSVFDENGRFNPTFDEKDVIIIEGDMIVEAIGQAPDYSYLPEELKSKLEFTRGRIL
VNEYGQTSIPWLFAGGDIVHGPDIINGIADGHRAAEGIDRYLNQ
>Mature_604_residues
MNAKEIFKKTFWGPTIAWKYLFAKPITITVPKVYREAAERYRGFHINDWELCTGCGTCSKICPTDAIKMIPVDIETEPGE
KAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIHISDNPNTFFFMPESDGIHHNNFPIGYVRDEDSELLDLERVEMEEI
PGAERVNSFIEFVKGYSKEQAIAEAARCVDCELCTDVCPAHMDIPEYIETVFNDDLKRGVEWIYKTNPLPGVCGRVCTHN
CEAVCSIGHRGEAVAIRWLKRYIIDQTPVEEIKKVANEEIIKKANKKVAIIGSGPSGLAAAYYLSLMGYKVTIFEAKPKA
GGVMRYGIPRYRLPDEALDKDIEVIQSLGVEIKLNTTVGKDVTLEQLKKEYDAVFLGTGFTIGKSTKIPGTEHEKVIQAL
PLLEKIRDYLRGEGEKPEIPNSLIVIGGGNVAMDVARSMARLQKMEGKEVNVKVVCLETMEEMPADLEEIVEGKEEGILF
FPSRGPSEVIVENGEIKGLKTVCCTSVFDENGRFNPTFDEKDVIIIEGDMIVEAIGQAPDYSYLPEELKSKLEFTRGRIL
VNEYGQTSIPWLFAGGDIVHGPDIINGIADGHRAAEGIDRYLNQ

Specific function: NITROGEN METABOLISM, GLUTAMATE BIOSYNTHESIS. THE CATALYZED REACTION BRINGS TOGETHER THE NITROGEN AND CARBON METABOLISM. [C]

COG id: COG0493

COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI119943098, Length=497, Percent_Identity=27.5653923541247, Blast_Score=157, Evalue=3e-38,
Organism=Escherichia coli, GI1789606, Length=472, Percent_Identity=34.1101694915254, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1788811, Length=594, Percent_Identity=28.6195286195286, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI87082180, Length=577, Percent_Identity=28.9428076256499, Blast_Score=216, Evalue=5e-57,
Organism=Escherichia coli, GI1788468, Length=447, Percent_Identity=33.3333333333333, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1789243, Length=477, Percent_Identity=29.769392033543, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1789463, Length=175, Percent_Identity=31.4285714285714, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17570289, Length=478, Percent_Identity=27.6150627615063, Blast_Score=149, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI71984108, Length=458, Percent_Identity=26.8558951965066, Blast_Score=140, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI17543860, Length=211, Percent_Identity=27.0142180094787, Blast_Score=78, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6320030, Length=293, Percent_Identity=31.0580204778157, Blast_Score=145, Evalue=3e-35,
Organism=Drosophila melanogaster, GI24665547, Length=449, Percent_Identity=30.2895322939866, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24665543, Length=449, Percent_Identity=30.2895322939866, Blast_Score=165, Evalue=1e-40,
Organism=Drosophila melanogaster, GI28574881, Length=449, Percent_Identity=30.2895322939866, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24665539, Length=449, Percent_Identity=30.2895322939866, Blast_Score=164, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24640763, Length=445, Percent_Identity=27.4157303370787, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI18858217, Length=445, Percent_Identity=27.4157303370787, Blast_Score=137, Evalue=2e-32,

Paralogues:

None

Copy number: 620 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR013027
- InterPro:   IPR012285
- InterPro:   IPR006006
- InterPro:   IPR009051
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.4.1.13 [H]

Molecular weight: Translated: 67406; Mature: 67406

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKEIFKKTFWGPTIAWKYLFAKPITITVPKVYREAAERYRGFHINDWELCTGCGTCSK
CCHHHHHHHHCCCHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
ICPTDAIKMIPVDIETEPGEKAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIHISDNP
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC
NTFFFMPESDGIHHNNFPIGYVRDEDSELLDLERVEMEEIPGAERVNSFIEFVKGYSKEQ
CEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
AIAEAARCVDCELCTDVCPAHMDIPEYIETVFNDDLKRGVEWIYKTNPLPGVCGRVCTHN
HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCC
CEAVCSIGHRGEAVAIRWLKRYIIDQTPVEEIKKVANEEIIKKANKKVAIIGSGPSGLAA
CHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
AYYLSLMGYKVTIFEAKPKAGGVMRYGIPRYRLPDEALDKDIEVIQSLGVEIKLNTTVGK
HHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
DVTLEQLKKEYDAVFLGTGFTIGKSTKIPGTEHEKVIQALPLLEKIRDYLRGEGEKPEIP
CCHHHHHHHHHCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NSLIVIGGGNVAMDVARSMARLQKMEGKEVNVKVVCLETMEEMPADLEEIVEGKEEGILF
CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCEEE
FPSRGPSEVIVENGEIKGLKTVCCTSVFDENGRFNPTFDEKDVIIIEGDMIVEAIGQAPD
ECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCC
YSYLPEELKSKLEFTRGRILVNEYGQTSIPWLFAGGDIVHGPDIINGIADGHRAAEGIDR
CCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCEECCHHHHHHHHCHHHHHHHHHH
YLNQ
HHCC
>Mature Secondary Structure
MNAKEIFKKTFWGPTIAWKYLFAKPITITVPKVYREAAERYRGFHINDWELCTGCGTCSK
CCHHHHHHHHCCCHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
ICPTDAIKMIPVDIETEPGEKAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIHISDNP
CCCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCC
NTFFFMPESDGIHHNNFPIGYVRDEDSELLDLERVEMEEIPGAERVNSFIEFVKGYSKEQ
CEEEEEECCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHH
AIAEAARCVDCELCTDVCPAHMDIPEYIETVFNDDLKRGVEWIYKTNPLPGVCGRVCTHN
HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHCC
CEAVCSIGHRGEAVAIRWLKRYIIDQTPVEEIKKVANEEIIKKANKKVAIIGSGPSGLAA
CHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
AYYLSLMGYKVTIFEAKPKAGGVMRYGIPRYRLPDEALDKDIEVIQSLGVEIKLNTTVGK
HHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC
DVTLEQLKKEYDAVFLGTGFTIGKSTKIPGTEHEKVIQALPLLEKIRDYLRGEGEKPEIP
CCHHHHHHHHHCEEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
NSLIVIGGGNVAMDVARSMARLQKMEGKEVNVKVVCLETMEEMPADLEEIVEGKEEGILF
CCEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHCCCCHHHHHCCCCCCEEE
FPSRGPSEVIVENGEIKGLKTVCCTSVFDENGRFNPTFDEKDVIIIEGDMIVEAIGQAPD
ECCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCC
YSYLPEELKSKLEFTRGRILVNEYGQTSIPWLFAGGDIVHGPDIINGIADGHRAAEGIDR
CCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEECCCEECCHHHHHHHHCHHHHHHHHHH
YLNQ
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3326786; 9278503; 9298646; 9600841; 2643092 [H]