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The map label for this gene is ybbD [H]

Identifier: 239618351

GI number: 239618351

Start: 2111038

End: 2112552

Strand: Reverse

Name: ybbD [H]

Synonym: Kole_1989

Alternate gene names: 239618351

Gene position: 2112552-2111038 (Counterclockwise)

Preceding gene: 239618352

Following gene: 239618350

Centisome position: 91.77

GC content: 39.93

Gene sequence:

>1515_bases
ATGACTCTTGAAGAAAAAGTAGGCAAACTATTTATGATTGGACTCCCGGGTAAAAGTATGGACGCTGAAACGGTGAAAAT
ACTCGAAAGAGTGAACCCAGGCTCGATTATCCTTTTTTCCCGCAACATTGAAAACCCTTCACAGGTTAAAGACTTCATCG
ATGAATGTAAACGAGTTTTAGGATACAAACCTCTGATAGCGATAGATCAGGAAGGCGGAATAGTTACACGCCTCACAAAG
GGGTTCGCCATATCACCGGGTGCCATGGCGATAGCAGCAACGGGTAATTCTGAGAATGCCTTTATAGCAGCAAGCATACT
TGCAAAAGAAATGCGCGCGGTAGGAATTGATTGGGATCTTGCTCCTGTAGTAGATATAAACAACAATCCTAACAATCCGG
GCATAGGAGTACGAAGTTTTTCAAGCGATGTAAATACTGTTGTTGAATTCGGCAGAAAATTCACCAAAGGGCTTCAAGAA
AATGGGATAATAGCATGTCTGAAACATTTTCCGGGTAAAGGGCGCGTTTCCGTTGATGCCCATATAGATATGCCGGTTTT
AGATGTGTCTTATGATGAACTAAAAAAATTCGAACTTATTCCTTTTAAAAAAATTGAAGCACTTAGCTGGATGCCGAGCC
ACATATATATTCCTGCTTTGCAGCATACGAAAATACCCGCAACCCTTTCCGAAGAGATCTTAACGGAGCTTGTGAGAAAA
AAACTGCATTACAAAGGAGTTTTGATTGCCGATGATCTGCTCATGGGTGGAATAACAAATTATTTTCCCGTCGAAGAAGC
TACTTTGAAAGCCTTTGCCGCTGGCATGGATATACTTACTGTATGTCATAACGATGACATACAAATAGCCGTTAAAAACT
ACCTGGTCAAGCAGATCGAAAAAGAGCCTAAACTCCAAAAACGCCTTGAAGAGTCGTTGAGCAAAATTGAAGCGATGAAA
AAACTAATCAACAAAGCCCCAAAAATTGAAATTAAACTGGTTGGTAGCGATGAGCACATTAATGAGATGCAACACATAAG
CGATGAAGCGATAACGCTCTTAAAAAACAAGGACAATCTTATTCCTCTTCAGCACGTTGACAATGTTTTTACGGTCGTTC
TTTCACGTTTAGTGCAAGTTGAAGATGAAAAAGAGGGAATTCCCTGGATATCACAGGAAATAGCTAAATACACAAACGCA
GAATTTTATACCTTTGACTTAAAAATAAAACCTGATCAAATCAACAAGTACATCAAAAAAGCCGTAGGAAAGGTAAACGT
TATATTCACTGAAAACGCTCATCTCTTTCCAGGGCAGAGAGCCCTGGCAGAAGAGATATCGAAAGTGGGGAAAACACTCA
TTGTTGCTTTACGAAATCCATACGATTGCTTTATAGAAGGAGTTGAAAACGCGATAGCTTCATATGGTTATACTCCTGAG
CTCCAAAAAAGTCTTTTCAAAGTTCTGACCGGTAAGATCAAAGCAAAAGGGAAATTACCTGTTGTGAATCGGTAA

Upstream 100 bases:

>100_bases
ATAGCTACGGGAAAAACTGATGTCAACGTCTGGCGTAAATCAGCTGAAGAGTTTATAGATACCGTTTCCGATCTATTGAT
ATACGGAGGGAATTTATATT

Downstream 100 bases:

>100_bases
ATAACCTTATACATGTAAAATATAAAAGCTTTCGTGGAGGAGGAGCACCGAATGCTTGAAAAAGTTGAAACAGAATTACC
AAACCCAAAAACCTCAAACT

Product: Beta-N-acetylhexosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MTLEEKVGKLFMIGLPGKSMDAETVKILERVNPGSIILFSRNIENPSQVKDFIDECKRVLGYKPLIAIDQEGGIVTRLTK
GFAISPGAMAIAATGNSENAFIAASILAKEMRAVGIDWDLAPVVDINNNPNNPGIGVRSFSSDVNTVVEFGRKFTKGLQE
NGIIACLKHFPGKGRVSVDAHIDMPVLDVSYDELKKFELIPFKKIEALSWMPSHIYIPALQHTKIPATLSEEILTELVRK
KLHYKGVLIADDLLMGGITNYFPVEEATLKAFAAGMDILTVCHNDDIQIAVKNYLVKQIEKEPKLQKRLEESLSKIEAMK
KLINKAPKIEIKLVGSDEHINEMQHISDEAITLLKNKDNLIPLQHVDNVFTVVLSRLVQVEDEKEGIPWISQEIAKYTNA
EFYTFDLKIKPDQINKYIKKAVGKVNVIFTENAHLFPGQRALAEEISKVGKTLIVALRNPYDCFIEGVENAIASYGYTPE
LQKSLFKVLTGKIKAKGKLPVVNR

Sequences:

>Translated_504_residues
MTLEEKVGKLFMIGLPGKSMDAETVKILERVNPGSIILFSRNIENPSQVKDFIDECKRVLGYKPLIAIDQEGGIVTRLTK
GFAISPGAMAIAATGNSENAFIAASILAKEMRAVGIDWDLAPVVDINNNPNNPGIGVRSFSSDVNTVVEFGRKFTKGLQE
NGIIACLKHFPGKGRVSVDAHIDMPVLDVSYDELKKFELIPFKKIEALSWMPSHIYIPALQHTKIPATLSEEILTELVRK
KLHYKGVLIADDLLMGGITNYFPVEEATLKAFAAGMDILTVCHNDDIQIAVKNYLVKQIEKEPKLQKRLEESLSKIEAMK
KLINKAPKIEIKLVGSDEHINEMQHISDEAITLLKNKDNLIPLQHVDNVFTVVLSRLVQVEDEKEGIPWISQEIAKYTNA
EFYTFDLKIKPDQINKYIKKAVGKVNVIFTENAHLFPGQRALAEEISKVGKTLIVALRNPYDCFIEGVENAIASYGYTPE
LQKSLFKVLTGKIKAKGKLPVVNR
>Mature_503_residues
TLEEKVGKLFMIGLPGKSMDAETVKILERVNPGSIILFSRNIENPSQVKDFIDECKRVLGYKPLIAIDQEGGIVTRLTKG
FAISPGAMAIAATGNSENAFIAASILAKEMRAVGIDWDLAPVVDINNNPNNPGIGVRSFSSDVNTVVEFGRKFTKGLQEN
GIIACLKHFPGKGRVSVDAHIDMPVLDVSYDELKKFELIPFKKIEALSWMPSHIYIPALQHTKIPATLSEEILTELVRKK
LHYKGVLIADDLLMGGITNYFPVEEATLKAFAAGMDILTVCHNDDIQIAVKNYLVKQIEKEPKLQKRLEESLSKIEAMKK
LINKAPKIEIKLVGSDEHINEMQHISDEAITLLKNKDNLIPLQHVDNVFTVVLSRLVQVEDEKEGIPWISQEIAKYTNAE
FYTFDLKIKPDQINKYIKKAVGKVNVIFTENAHLFPGQRALAEEISKVGKTLIVALRNPYDCFIEGVENAIASYGYTPEL
QKSLFKVLTGKIKAKGKLPVVNR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=294, Percent_Identity=30.952380952381, Blast_Score=140, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 56115; Mature: 55984

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEEKVGKLFMIGLPGKSMDAETVKILERVNPGSIILFSRNIENPSQVKDFIDECKRVL
CCCHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
GYKPLIAIDQEGGIVTRLTKGFAISPGAMAIAATGNSENAFIAASILAKEMRAVGIDWDL
CCCCEEEEECCCCEEEEECCCEEECCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCC
APVVDINNNPNNPGIGVRSFSSDVNTVVEFGRKFTKGLQENGIIACLKHFPGKGRVSVDA
EEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHCCCEEEEEHHCCCCCEEEEEE
HIDMPVLDVSYDELKKFELIPFKKIEALSWMPSHIYIPALQHTKIPATLSEEILTELVRK
ECCCCEEECCHHHHHHEECCCCHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
KLHYKGVLIADDLLMGGITNYFPVEEATLKAFAAGMDILTVCHNDDIQIAVKNYLVKQIE
HHHHCCEEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHHHH
KEPKLQKRLEESLSKIEAMKKLINKAPKIEIKLVGSDEHINEMQHISDEAITLLKNKDNL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCHHHHEEECCCCCE
IPLQHVDNVFTVVLSRLVQVEDEKEGIPWISQEIAKYTNAEFYTFDLKIKPDQINKYIKK
ECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
AVGKVNVIFTENAHLFPGQRALAEEISKVGKTLIVALRNPYDCFIEGVENAIASYGYTPE
HHCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCHH
LQKSLFKVLTGKIKAKGKLPVVNR
HHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLEEKVGKLFMIGLPGKSMDAETVKILERVNPGSIILFSRNIENPSQVKDFIDECKRVL
CCHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
GYKPLIAIDQEGGIVTRLTKGFAISPGAMAIAATGNSENAFIAASILAKEMRAVGIDWDL
CCCCEEEEECCCCEEEEECCCEEECCCCEEEEEECCCCCCEEHHHHHHHHHHHCCCCCCC
APVVDINNNPNNPGIGVRSFSSDVNTVVEFGRKFTKGLQENGIIACLKHFPGKGRVSVDA
EEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCHHCCCEEEEEHHCCCCCEEEEEE
HIDMPVLDVSYDELKKFELIPFKKIEALSWMPSHIYIPALQHTKIPATLSEEILTELVRK
ECCCCEEECCHHHHHHEECCCCHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH
KLHYKGVLIADDLLMGGITNYFPVEEATLKAFAAGMDILTVCHNDDIQIAVKNYLVKQIE
HHHHCCEEEEHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCEEEHHHHHHHHHHH
KEPKLQKRLEESLSKIEAMKKLINKAPKIEIKLVGSDEHINEMQHISDEAITLLKNKDNL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCHHHHEEECCCCCE
IPLQHVDNVFTVVLSRLVQVEDEKEGIPWISQEIAKYTNAEFYTFDLKIKPDQINKYIKK
ECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
AVGKVNVIFTENAHLFPGQRALAEEISKVGKTLIVALRNPYDCFIEGVENAIASYGYTPE
HHCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCCCHH
LQKSLFKVLTGKIKAKGKLPVVNR
HHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]