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The map label for this gene is yvoA [H]

Identifier: 239618349

GI number: 239618349

Start: 2109356

End: 2110084

Strand: Reverse

Name: yvoA [H]

Synonym: Kole_1987

Alternate gene names: 239618349

Gene position: 2110084-2109356 (Counterclockwise)

Preceding gene: 239618350

Following gene: 239618348

Centisome position: 91.66

GC content: 40.19

Gene sequence:

>729_bases
ATGAGGGAAGCACCTGTACCTCTTCATTATCAAATTTACCTTAAATTGAGAGAGAACATCGAAAACGGTATCTACAAAAG
AGGGGATCAACTCCCCACAGAGAAAGAAATCTGTGAAATGTTCAATGTAAGTCGAACAACCGTTAGACGCGCGCTTGAGG
AACTCAAGAGGGAAGGAATTATCGAGAGGATCAAAGGCAAAGGAACGTTTATAACTCTCGACAAAAAGGAAGAACAGCTT
AGCAATCTTACCGGTTTTTCAGAAGAAGCAAAGCTAATGGGGATGAAAGCTCACTCCAAAGTAATCACGAATAAACTAAC
TCGAATCCCTCTTGAAGCAAAAGAAGTATTCGATATGCCGGGCGAAGGAATGGTGGTTCTGTTAAAAAGAATCAGATTTC
TAGATAACGAACCATATGCTATTGAATGGGCTTACCTCAATCCAAATGCGGATATCAGGGTGCTAAACATTCTGGAACAC
AACATGGAAAAAGAATCCCTGTATGGAATTCTGAAAGATGAATTTGGTATCTCCCTTTCGCATGCTGAAGAAATCATGGA
ACTTATCAAAATCGATGGAGAAAACGCAAGATATCTAAACCAGGATGATGGAGAATGCGCTATATTACGAAGAAGATACA
CCTACACCTCAGACGGTAAATGTATCGAGTATGTTCTGTCAATATACAGAGGAGACAAATACAAATTCAAGGTGGTACGC
CGAACGTGA

Upstream 100 bases:

>100_bases
TTATGATCCTTTCTAACAAAAGCAAAGAAGAATGTATGAACGCACTTTCAAAAAGAGAAACTCTAAGTGAAGCTCTGGAA
TTGTTGAGGAGTGATAAAAA

Downstream 100 bases:

>100_bases
AATTTCTTGGTGTTGACGGTGGTGGAACGCATTTGCGAGCAACTCTTCTTGAAAACCATACCGAAAAGAAATTTCTAATA
AAAGAAGGCGTGAACCTAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MREAPVPLHYQIYLKLRENIENGIYKRGDQLPTEKEICEMFNVSRTTVRRALEELKREGIIERIKGKGTFITLDKKEEQL
SNLTGFSEEAKLMGMKAHSKVITNKLTRIPLEAKEVFDMPGEGMVVLLKRIRFLDNEPYAIEWAYLNPNADIRVLNILEH
NMEKESLYGILKDEFGISLSHAEEIMELIKIDGENARYLNQDDGECAILRRRYTYTSDGKCIEYVLSIYRGDKYKFKVVR
RT

Sequences:

>Translated_242_residues
MREAPVPLHYQIYLKLRENIENGIYKRGDQLPTEKEICEMFNVSRTTVRRALEELKREGIIERIKGKGTFITLDKKEEQL
SNLTGFSEEAKLMGMKAHSKVITNKLTRIPLEAKEVFDMPGEGMVVLLKRIRFLDNEPYAIEWAYLNPNADIRVLNILEH
NMEKESLYGILKDEFGISLSHAEEIMELIKIDGENARYLNQDDGECAILRRRYTYTSDGKCIEYVLSIYRGDKYKFKVVR
RT
>Mature_242_residues
MREAPVPLHYQIYLKLRENIENGIYKRGDQLPTEKEICEMFNVSRTTVRRALEELKREGIIERIKGKGTFITLDKKEEQL
SNLTGFSEEAKLMGMKAHSKVITNKLTRIPLEAKEVFDMPGEGMVVLLKRIRFLDNEPYAIEWAYLNPNADIRVLNILEH
NMEKESLYGILKDEFGISLSHAEEIMELIKIDGENARYLNQDDGECAILRRRYTYTSDGKCIEYVLSIYRGDKYKFKVVR
RT

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=199, Percent_Identity=29.1457286432161, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1786950, Length=238, Percent_Identity=29.4117647058824, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788418, Length=231, Percent_Identity=27.2727272727273, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1790118, Length=221, Percent_Identity=23.9819004524887, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28274; Mature: 28274

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREAPVPLHYQIYLKLRENIENGIYKRGDQLPTEKEICEMFNVSRTTVRRALEELKREGI
CCCCCCCEEHEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCH
IERIKGKGTFITLDKKEEQLSNLTGFSEEAKLMGMKAHSKVITNKLTRIPLEAKEVFDMP
HHHHCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
GEGMVVLLKRIRFLDNEPYAIEWAYLNPNADIRVLNILEHNMEKESLYGILKDEFGISLS
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCHH
HAEEIMELIKIDGENARYLNQDDGECAILRRRYTYTSDGKCIEYVLSIYRGDKYKFKVVR
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEE
RT
CC
>Mature Secondary Structure
MREAPVPLHYQIYLKLRENIENGIYKRGDQLPTEKEICEMFNVSRTTVRRALEELKREGI
CCCCCCCEEHEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCH
IERIKGKGTFITLDKKEEQLSNLTGFSEEAKLMGMKAHSKVITNKLTRIPLEAKEVFDMP
HHHHCCCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
GEGMVVLLKRIRFLDNEPYAIEWAYLNPNADIRVLNILEHNMEKESLYGILKDEFGISLS
CCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEHHHHCCCHHHHHHHHHHHHCCCHH
HAEEIMELIKIDGENARYLNQDDGECAILRRRYTYTSDGKCIEYVLSIYRGDKYKFKVVR
HHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEE
RT
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]