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The map label for this gene is araQ [H]

Identifier: 239618338

GI number: 239618338

Start: 2094874

End: 2095689

Strand: Direct

Name: araQ [H]

Synonym: Kole_1975

Alternate gene names: 239618338

Gene position: 2094874-2095689 (Clockwise)

Preceding gene: 239618337

Following gene: 239618339

Centisome position: 91.0

GC content: 36.15

Gene sequence:

>816_bases
ATGAAAGCAAAAAAGATTGTTCTGTATGTTTTGCTATTTGCTTTTGCGATAACCACATTACTCCCTTTAGTATGGACAAT
ATCTACATCACTAAAGACCAGATATGCTACGCTTAAATATCCTCCCGAATTTCTACCAGATGAGGTATCTTTTTCAAACT
ACACAACGATTTTTAACAAATATCCCTTTGGGAGATTTCTGTTTAACAGTTTTCTCGTTACCCTTTCAACTGTATTTCTT
CAGGTTGTTGTTGCGGCCATGGCAGCCTATGCTTTTGCGAGATTTGACTTTAAATATAAAGAATTACTGTTTATGTTCTA
TATAGCCACGTTGATGTTTCCTTTTCAGGTTAAAGCTATTCCCTTATACCTTATAGTTAGAAGTTTTGGTTGGATCAATA
CATATCAAGGTTTAATTCTTCCCAAGGTTTTTAGTGCTTTTGGAGTTTTTCTGCTTCGACAATCTATTTTATCCACTCCA
AAAGATTATGATGAATCAGCAGCGATGGATGGCGCAAATCGCATCACGATTTTTTTGAAAATTATTCTTCCACTTAATAA
AGGGGCATTAGCGACATTGACTATTTTTGCATTTATGGATTCCTGGAATGATTATCTCTGGCCACTGATTGTGACTACTA
CTCAAGAAATGATGACAATCCCACTTGGGTTAGCGAGCTTGCAAGGAAGATGGACAACACAATGGAATTTAGTCAGTGCC
GGTACTGTTGTAAGCATTATTCCTATTTTGATTGTTTATATCGTTGCTCAGAAGTGGTTTATTGAGGGCATTTCAGCAAC
AGGATTAAAGGGTTAA

Upstream 100 bases:

>100_bases
AAATGGGATATGCTGCGGCGATGTCCTGGTTTCTTTTTGCGTTAATCTTTGGCATATCTTTTCTACAAAACAGATATCAA
AAGAAATGGGTGTTTTATTC

Downstream 100 bases:

>100_bases
TCAAACAGGAGGTGTGAGGTATGAGAAAAGTTCTTCTTTTGGCGCTTGTAATGTCATTATTGGTTGTAGCTCTTGGGGCA
ATAAAGATTAGTTACATGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MKAKKIVLYVLLFAFAITTLLPLVWTISTSLKTRYATLKYPPEFLPDEVSFSNYTTIFNKYPFGRFLFNSFLVTLSTVFL
QVVVAAMAAYAFARFDFKYKELLFMFYIATLMFPFQVKAIPLYLIVRSFGWINTYQGLILPKVFSAFGVFLLRQSILSTP
KDYDESAAMDGANRITIFLKIILPLNKGALATLTIFAFMDSWNDYLWPLIVTTTQEMMTIPLGLASLQGRWTTQWNLVSA
GTVVSIIPILIVYIVAQKWFIEGISATGLKG

Sequences:

>Translated_271_residues
MKAKKIVLYVLLFAFAITTLLPLVWTISTSLKTRYATLKYPPEFLPDEVSFSNYTTIFNKYPFGRFLFNSFLVTLSTVFL
QVVVAAMAAYAFARFDFKYKELLFMFYIATLMFPFQVKAIPLYLIVRSFGWINTYQGLILPKVFSAFGVFLLRQSILSTP
KDYDESAAMDGANRITIFLKIILPLNKGALATLTIFAFMDSWNDYLWPLIVTTTQEMMTIPLGLASLQGRWTTQWNLVSA
GTVVSIIPILIVYIVAQKWFIEGISATGLKG
>Mature_271_residues
MKAKKIVLYVLLFAFAITTLLPLVWTISTSLKTRYATLKYPPEFLPDEVSFSNYTTIFNKYPFGRFLFNSFLVTLSTVFL
QVVVAAMAAYAFARFDFKYKELLFMFYIATLMFPFQVKAIPLYLIVRSFGWINTYQGLILPKVFSAFGVFLLRQSILSTP
KDYDESAAMDGANRITIFLKIILPLNKGALATLTIFAFMDSWNDYLWPLIVTTTQEMMTIPLGLASLQGRWTTQWNLVSA
GTVVSIIPILIVYIVAQKWFIEGISATGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=33.6538461538462, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=29.4117647058824, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1790464, Length=291, Percent_Identity=24.7422680412371, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30781; Mature: 30781

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAKKIVLYVLLFAFAITTLLPLVWTISTSLKTRYATLKYPPEFLPDEVSFSNYTTIFNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCHHHHHHC
YPFGRFLFNSFLVTLSTVFLQVVVAAMAAYAFARFDFKYKELLFMFYIATLMFPFQVKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
PLYLIVRSFGWINTYQGLILPKVFSAFGVFLLRQSILSTPKDYDESAAMDGANRITIFLK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHEEEEE
IILPLNKGALATLTIFAFMDSWNDYLWPLIVTTTQEMMTIPLGLASLQGRWTTQWNLVSA
EEHCCCCCHHHHHHHHHHHHCCCCHHHHHHEECHHHHHHHHHHHHHHCCCCCCEEEEEEH
GTVVSIIPILIVYIVAQKWFIEGISATGLKG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKAKKIVLYVLLFAFAITTLLPLVWTISTSLKTRYATLKYPPEFLPDEVSFSNYTTIFNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCHHHHHHC
YPFGRFLFNSFLVTLSTVFLQVVVAAMAAYAFARFDFKYKELLFMFYIATLMFPFQVKAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
PLYLIVRSFGWINTYQGLILPKVFSAFGVFLLRQSILSTPKDYDESAAMDGANRITIFLK
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHEEEEE
IILPLNKGALATLTIFAFMDSWNDYLWPLIVTTTQEMMTIPLGLASLQGRWTTQWNLVSA
EEHCCCCCHHHHHHHHHHHHCCCCHHHHHHEECHHHHHHHHHHHHHHCCCCCCEEEEEEH
GTVVSIIPILIVYIVAQKWFIEGISATGLKG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]