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The map label for this gene is ygiQ [C]

Identifier: 239618121

GI number: 239618121

Start: 1884466

End: 1886127

Strand: Direct

Name: ygiQ [C]

Synonym: Kole_1753

Alternate gene names: 239618121

Gene position: 1884466-1886127 (Clockwise)

Preceding gene: 239618120

Following gene: 239618122

Centisome position: 81.86

GC content: 44.46

Gene sequence:

>1662_bases
ATGCAGCATATACCTATGACACGGGAAGAAATGAAGGCACGAGGCTGGGATCAGCTCGATGTCATACTGATAACCGGTGA
TGCATATGTAGATCATCCTTCCTTTGGTGTAGCAATTATAGCAAGAGTACTTGAAGCTAAAGGGTTTAAAGCCGGAGTCA
TCTCACAACCCGATTGGAAAAACCCTGAAGAGATAACCAAATTAGGAAAACCGAAGCTTTTCTTTGGCATCACAGCAGGC
AATGTGGATTCGCTGGTGGCGAATTACACAGCATCAAGAAAGAAGAGAAAAAGAGATGATTATACACCCGGTGGTTTCGG
TGGTAAAAGGCCGGACAGAGCCACAATCGTCTATTCCAACCTTGTCCGCAGCGTGTTCAAAGATGTTCCTATCATTCTTG
GTGGAATAGAAGCGAGCTTGAGAAGGTTTGCCCATTACGATTGGTGGTCTAATCGCGTTAGAAAGCCCGTGCTCGTCGAT
TCCAAAGCTGATCTAATCGCTTATGGAATGGCTGAAAAAAGCATAATAAAAATAGCTGAAAAACTCAGAGATACCGGAGA
AATACCTAAAGATATTCCGGGAACCGTTTACTGGAGTTCAAAAAAACCAGAATCGGGAATCGAACTTCCTTCATATGATG
AGGTATCCTCTGATCGATACGCCTATCTTCAGGCCTTTAAGATCCTGTATCGCGAAACCGATCCTGTGAATGGAAGAGTG
ATATATCAAAGGCAGGATACCCGGTACGTTATCCAAAACCCTCCGGTACTTTCCACCACTGAAGAACTTGACTGGGTCTA
TTCGCTTCCATACACACGCAAGGTTCATCCCCACTGTCTCAAGAAAGGCCACGTGAAAGCGCTGGAAACCGTTAAGTTTT
CAATCACCAGCCATCGAGGATGTTACGGAGAATGCAATTTCTGTGCCCTCACGCTGCACCAGGGCAAATACATCGTAAGC
AGAAGCGAAAAATCGATAATCAAAGAGACCAGGCGGCTCACAAAAGACCCGGATTTCAAAGGAGTTATAACTGATGTGGG
TGGCCCAACCGCAAACATGTATGGTTATGACTGTGAAAAAAAGCATAAACATGGCGCGTGTAAAGACAAACGTTGCCTAC
TTCCTCATGTGTGTCCTGCATTGAAGGTTGACCATTCCCGGTACTTGAACCTACTCAGAAAACTCAGGAATCTGAAGGGT
GTAAAACACGTGTTCGTGTCTTCTGGAATAAGATACGACCTGATCCTTGCGGACAAAAAACACGGCAGAGAATTTTTGAG
AGAATTGGTTCTGTATCACGTTTCTGGACAGCTGAAGATTGCTCCGGAACATATCTCCGCGAGGGTTCTCCGACTTATGG
GAAAACCGGGAAAAGATGTTTTAGACCGCTTCATAAAAGAGTTTGAAAGAGTGAAGGGAAACAAGAAAATCTATCTAATC
GGGTACTTCATCGCGGCGCACCCCGGTTCAACCGTTGAGGATATGAAAAAGCTAAAAAGGTACGCAATAAGGAAAATGGG
ATATAAACCTCAACAGGTTCAAATCTTCACGCCGACTCCTGCTACCCTATCCACAGCAATGTATTACACGGAACTCGACC
CTGAAACCGGTGAAAACATATTCGTTGAAAAAACGAAAAAAGAAGGAAATTGCAGAAGATGA

Upstream 100 bases:

>100_bases
CTCTCCAGTTTTATTTTAGAAACAGCCGAGGTTGCTTCCTGAAATAAGCACTCACCTTTTGCGCTGAGTTCGACGATTGC
AGAAGGAGGTAAATCCCGTA

Downstream 100 bases:

>100_bases
TGGTAGTGGGAGTAAAAGATCGATAACCGAGAGTCGAGAACCGGTAGCCGCTGCGCGGCCCTCCGAATCCCTTCGGGATT
GTTACGGTGTGCCCGGCATG

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MQHIPMTREEMKARGWDQLDVILITGDAYVDHPSFGVAIIARVLEAKGFKAGVISQPDWKNPEEITKLGKPKLFFGITAG
NVDSLVANYTASRKKRKRDDYTPGGFGGKRPDRATIVYSNLVRSVFKDVPIILGGIEASLRRFAHYDWWSNRVRKPVLVD
SKADLIAYGMAEKSIIKIAEKLRDTGEIPKDIPGTVYWSSKKPESGIELPSYDEVSSDRYAYLQAFKILYRETDPVNGRV
IYQRQDTRYVIQNPPVLSTTEELDWVYSLPYTRKVHPHCLKKGHVKALETVKFSITSHRGCYGECNFCALTLHQGKYIVS
RSEKSIIKETRRLTKDPDFKGVITDVGGPTANMYGYDCEKKHKHGACKDKRCLLPHVCPALKVDHSRYLNLLRKLRNLKG
VKHVFVSSGIRYDLILADKKHGREFLRELVLYHVSGQLKIAPEHISARVLRLMGKPGKDVLDRFIKEFERVKGNKKIYLI
GYFIAAHPGSTVEDMKKLKRYAIRKMGYKPQQVQIFTPTPATLSTAMYYTELDPETGENIFVEKTKKEGNCRR

Sequences:

>Translated_553_residues
MQHIPMTREEMKARGWDQLDVILITGDAYVDHPSFGVAIIARVLEAKGFKAGVISQPDWKNPEEITKLGKPKLFFGITAG
NVDSLVANYTASRKKRKRDDYTPGGFGGKRPDRATIVYSNLVRSVFKDVPIILGGIEASLRRFAHYDWWSNRVRKPVLVD
SKADLIAYGMAEKSIIKIAEKLRDTGEIPKDIPGTVYWSSKKPESGIELPSYDEVSSDRYAYLQAFKILYRETDPVNGRV
IYQRQDTRYVIQNPPVLSTTEELDWVYSLPYTRKVHPHCLKKGHVKALETVKFSITSHRGCYGECNFCALTLHQGKYIVS
RSEKSIIKETRRLTKDPDFKGVITDVGGPTANMYGYDCEKKHKHGACKDKRCLLPHVCPALKVDHSRYLNLLRKLRNLKG
VKHVFVSSGIRYDLILADKKHGREFLRELVLYHVSGQLKIAPEHISARVLRLMGKPGKDVLDRFIKEFERVKGNKKIYLI
GYFIAAHPGSTVEDMKKLKRYAIRKMGYKPQQVQIFTPTPATLSTAMYYTELDPETGENIFVEKTKKEGNCRR
>Mature_553_residues
MQHIPMTREEMKARGWDQLDVILITGDAYVDHPSFGVAIIARVLEAKGFKAGVISQPDWKNPEEITKLGKPKLFFGITAG
NVDSLVANYTASRKKRKRDDYTPGGFGGKRPDRATIVYSNLVRSVFKDVPIILGGIEASLRRFAHYDWWSNRVRKPVLVD
SKADLIAYGMAEKSIIKIAEKLRDTGEIPKDIPGTVYWSSKKPESGIELPSYDEVSSDRYAYLQAFKILYRETDPVNGRV
IYQRQDTRYVIQNPPVLSTTEELDWVYSLPYTRKVHPHCLKKGHVKALETVKFSITSHRGCYGECNFCALTLHQGKYIVS
RSEKSIIKETRRLTKDPDFKGVITDVGGPTANMYGYDCEKKHKHGACKDKRCLLPHVCPALKVDHSRYLNLLRKLRNLKG
VKHVFVSSGIRYDLILADKKHGREFLRELVLYHVSGQLKIAPEHISARVLRLMGKPGKDVLDRFIKEFERVKGNKKIYLI
GYFIAAHPGSTVEDMKKLKRYAIRKMGYKPQQVQIFTPTPATLSTAMYYTELDPETGENIFVEKTKKEGNCRR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=613, Percent_Identity=42.5774877650897, Blast_Score=493, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 63103; Mature: 63103

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHIPMTREEMKARGWDQLDVILITGDAYVDHPSFGVAIIARVLEAKGFKAGVISQPDWK
CCCCCCCHHHHHHCCCCCEEEEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
NPEEITKLGKPKLFFGITAGNVDSLVANYTASRKKRKRDDYTPGGFGGKRPDRATIVYSN
CHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHH
LVRSVFKDVPIILGGIEASLRRFAHYDWWSNRVRKPVLVDSKADLIAYGMAEKSIIKIAE
HHHHHHHCCCEEEECHHHHHHHHHHCCHHHHHCCCCEEECCCCCEEEECCCHHHHHHHHH
KLRDTGEIPKDIPGTVYWSSKKPESGIELPSYDEVSSDRYAYLQAFKILYRETDPVNGRV
HHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
IYQRQDTRYVIQNPPVLSTTEELDWVYSLPYTRKVHPHCLKKGHVKALETVKFSITSHRG
EEEECCCEEEECCCCCCCCHHHCCEEEECCCCCCCCHHHHCCCCHHHHHEEEEEEECCCC
CYGECNFCALTLHQGKYIVSRSEKSIIKETRRLTKDPDFKGVITDVGGPTANMYGYDCEK
CCCCCCEEEEEEECCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCH
KHKHGACKDKRCLLPHVCPALKVDHSRYLNLLRKLRNLKGVKHVFVSSGIRYDLILADKK
HHCCCCCCCCCCCCHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
HGREFLRELVLYHVSGQLKIAPEHISARVLRLMGKPGKDVLDRFIKEFERVKGNKKIYLI
HHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE
GYFIAAHPGSTVEDMKKLKRYAIRKMGYKPQQVQIFTPTPATLSTAMYYTELDPETGENI
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCEE
FVEKTKKEGNCRR
EEEECCCCCCCCC
>Mature Secondary Structure
MQHIPMTREEMKARGWDQLDVILITGDAYVDHPSFGVAIIARVLEAKGFKAGVISQPDWK
CCCCCCCHHHHHHCCCCCEEEEEEECCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
NPEEITKLGKPKLFFGITAGNVDSLVANYTASRKKRKRDDYTPGGFGGKRPDRATIVYSN
CHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHH
LVRSVFKDVPIILGGIEASLRRFAHYDWWSNRVRKPVLVDSKADLIAYGMAEKSIIKIAE
HHHHHHHCCCEEEECHHHHHHHHHHCCHHHHHCCCCEEECCCCCEEEECCCHHHHHHHHH
KLRDTGEIPKDIPGTVYWSSKKPESGIELPSYDEVSSDRYAYLQAFKILYRETDPVNGRV
HHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
IYQRQDTRYVIQNPPVLSTTEELDWVYSLPYTRKVHPHCLKKGHVKALETVKFSITSHRG
EEEECCCEEEECCCCCCCCHHHCCEEEECCCCCCCCHHHHCCCCHHHHHEEEEEEECCCC
CYGECNFCALTLHQGKYIVSRSEKSIIKETRRLTKDPDFKGVITDVGGPTANMYGYDCEK
CCCCCCEEEEEEECCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCH
KHKHGACKDKRCLLPHVCPALKVDHSRYLNLLRKLRNLKGVKHVFVSSGIRYDLILADKK
HHCCCCCCCCCCCCHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCH
HGREFLRELVLYHVSGQLKIAPEHISARVLRLMGKPGKDVLDRFIKEFERVKGNKKIYLI
HHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEE
GYFIAAHPGSTVEDMKKLKRYAIRKMGYKPQQVQIFTPTPATLSTAMYYTELDPETGENI
EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCEE
FVEKTKKEGNCRR
EEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA