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The map label for this gene is csp [H]

Identifier: 239617864

GI number: 239617864

Start: 1591481

End: 1591684

Strand: Direct

Name: csp [H]

Synonym: Kole_1491

Alternate gene names: 239617864

Gene position: 1591481-1591684 (Clockwise)

Preceding gene: 239617863

Following gene: 239617871

Centisome position: 69.13

GC content: 44.61

Gene sequence:

>204_bases
ATGAAAGGTACAGTCAAGTGGTTCAGCGGTAAGAAGGGCTACGGCTTTATCACTATGGACGATGGTGGGGATATTTTCGT
TCATTTCAGTGCCATTGAAATGGATGGTTACAAGACGCTTAACGAAGGTCAGAGAGTTGAATTTGAGATTGAAGAAGGCC
CGAAAGGTCGTCCACAAGCCGCAAAGGTTAGAGTCATAGAATGA

Upstream 100 bases:

>100_bases
CTGAAATCCTTGACTTAAAACAATATTTTTAGTATAGTTGAATAGTCCGTAAGGACGTAATGCAAGCCCCACAAAAGGGG
TGTAACTGAGGAGGAGTAAA

Downstream 100 bases:

>100_bases
AACAAAAATCATAAAATAAGGCGCCTGTTTCGGCGCCTTTCTTTTTTTTGTCTCTCTTTTATCTGGTGAATCTTTACAAA
CTGCCCAGGTATTTTTCAAG

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MKGTVKWFSGKKGYGFITMDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPKGRPQAAKVRVIE

Sequences:

>Translated_67_residues
MKGTVKWFSGKKGYGFITMDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPKGRPQAAKVRVIE
>Mature_67_residues
MKGTVKWFSGKKGYGFITMDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPKGRPQAAKVRVIE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=65.625, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=61.1940298507463, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=56.7164179104478, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=61.1940298507463, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=57.3529411764706, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=58.2089552238806, Blast_Score=76, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7528; Mature: 7528

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGTVKWFSGKKGYGFITMDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPKGRPQA
CCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCEECCCCCEEEEEECCCCCCCCCC
AKVRVIE
EEEEEEC
>Mature Secondary Structure
MKGTVKWFSGKKGYGFITMDDGGDIFVHFSAIEMDGYKTLNEGQRVEFEIEEGPKGRPQA
CCCEEEEECCCCCCEEEEECCCCEEEEEEEEEEECCCEECCCCCEEEEEECCCCCCCCCC
AKVRVIE
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10048332; 10360571; 10431826; 11322871 [H]