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The map label for this gene is yhcC [C]

Identifier: 239617821

GI number: 239617821

Start: 1546337

End: 1547506

Strand: Direct

Name: yhcC [C]

Synonym: Kole_1447

Alternate gene names: 239617821

Gene position: 1546337-1547506 (Clockwise)

Preceding gene: 239617820

Following gene: 239617822

Centisome position: 67.17

GC content: 41.45

Gene sequence:

>1170_bases
TTGAAGTTAGTGTTTGTGTTATCAAAAACAAACAGATACAGTATTGCTGCGTTGTTTGGAGCCATTGAAGACCTTGAAGT
TGATGTCGAAGTAATCGGTGAATCTGAGTTTATAAATGCTAATTACATTGGGAGCGATGATGCTATCATCGCTCTATCTT
TTATGTCTCCAGAGGCAAAAAAGAATGAGAAGTTAATACGAAAGTTAAGTTCCGCTGGAAACAGGGTGATCGTTGGAGGT
CCGCATGCTTCAGCAAAACCTGAGGAAATTCTGGGGATGGGAGCATATGCCGTTTTTGTCGGTGAAGGAGAAAGGACTTT
AAGGAAGTTCCTTTTGAATCCTACTCCTGGTATTTGGTATGGTGAAAAGTTACAGCAACTCGACACATTTCCGCCGTTTT
CATTGAAACATGAGTTCTTTTCACCAATGGAAATCTCCAGAGGTTGTCCTTTTGGTTGTAACTACTGTCAGACACCTAGA
ATTTTCGGAAGACGTGTTCGGCACAGGAGTGTGGAAAATATCCTTCATTTTGCAAGAGAAAGTGTTGAGCGTGGAAGAAA
AGTGGCACGTTTTATAACTCCGAATGCTTTTGGATATGGTTCTAAAAATGGGGTTACTCCCAATACGAAAGTTATTTACG
AACTCCTATCCGGGATGAGAAAGATCGGTATGCGCGAGGTTTATTTTGGTTCTTTTCCATCAGATGTGAGGCCGGAATCC
GTAAGCGATGATGTTCTTGCTATTGTTCAGGAGTTTTGTGATAATAAGGTTATTGTTGTCGGCTTGCAGAGCGGCAGTGA
TCGGATCTTGAAACAGCTGAACCGCGGTCATGACGTTCAAACGGCTATTAACACTATCAGGAAAATTTCAAGATACGGGT
TCACACCTTATGTGGACATGATCTTTGGATTTCCCTTTGAAGAGGACAGTGATATCGAAAAATCCTTTGAAGTAGCGTAT
TACCTTTACGAAAAATACGGTGCGGTAATCCACGGCCATACTTTTATGCCGCTTCCAGGTACACCCTTTGAGAACTTAAA
ATCAAAACTCAGTTCCAAAACTTTGAGGGAACTTGGAAGACTTTCCGCAAAAGGTATAATGAAGGGACAATGGCAGAATC
AAATAACGATTTCCCAGGAAATTTCGCACAGTGAACCAAAAGGAGAGTGA

Upstream 100 bases:

>100_bases
AACTTGGAAGCCCTGGAATCGTAATGGCGGTAGTTTTATTCTTTTTTATCGCTATGCAAGATATCAAAAAGATACTCAAG
AAAGGAGAAGACAGTCCAAT

Downstream 100 bases:

>100_bases
GTGATCAATGGGAAAAACGACAAAGATAACAATAGGAAGTGTTCAATTCAATCCTCTACAAAAAAACGGCGGCGAGAATC
TGGAAAGAGCTGTAAACTAT

Product: Radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MKLVFVLSKTNRYSIAALFGAIEDLEVDVEVIGESEFINANYIGSDDAIIALSFMSPEAKKNEKLIRKLSSAGNRVIVGG
PHASAKPEEILGMGAYAVFVGEGERTLRKFLLNPTPGIWYGEKLQQLDTFPPFSLKHEFFSPMEISRGCPFGCNYCQTPR
IFGRRVRHRSVENILHFARESVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIGMREVYFGSFPSDVRPES
VSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRYGFTPYVDMIFGFPFEEDSDIEKSFEVAY
YLYEKYGAVIHGHTFMPLPGTPFENLKSKLSSKTLRELGRLSAKGIMKGQWQNQITISQEISHSEPKGE

Sequences:

>Translated_389_residues
MKLVFVLSKTNRYSIAALFGAIEDLEVDVEVIGESEFINANYIGSDDAIIALSFMSPEAKKNEKLIRKLSSAGNRVIVGG
PHASAKPEEILGMGAYAVFVGEGERTLRKFLLNPTPGIWYGEKLQQLDTFPPFSLKHEFFSPMEISRGCPFGCNYCQTPR
IFGRRVRHRSVENILHFARESVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIGMREVYFGSFPSDVRPES
VSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRYGFTPYVDMIFGFPFEEDSDIEKSFEVAY
YLYEKYGAVIHGHTFMPLPGTPFENLKSKLSSKTLRELGRLSAKGIMKGQWQNQITISQEISHSEPKGE
>Mature_389_residues
MKLVFVLSKTNRYSIAALFGAIEDLEVDVEVIGESEFINANYIGSDDAIIALSFMSPEAKKNEKLIRKLSSAGNRVIVGG
PHASAKPEEILGMGAYAVFVGEGERTLRKFLLNPTPGIWYGEKLQQLDTFPPFSLKHEFFSPMEISRGCPFGCNYCQTPR
IFGRRVRHRSVENILHFARESVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIGMREVYFGSFPSDVRPES
VSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRYGFTPYVDMIFGFPFEEDSDIEKSFEVAY
YLYEKYGAVIHGHTFMPLPGTPFENLKSKLSSKTLRELGRLSAKGIMKGQWQNQITISQEISHSEPKGE

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 43694; Mature: 43694

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVFVLSKTNRYSIAALFGAIEDLEVDVEVIGESEFINANYIGSDDAIIALSFMSPEAK
CEEEEEEECCCCEEHHHHHHHHHHCEEEEEEECCCCEECCCEECCCCCEEEEEECCCCCH
KNEKLIRKLSSAGNRVIVGGPHASAKPEEILGMGAYAVFVGEGERTLRKFLLNPTPGIWY
HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCH
GEKLQQLDTFPPFSLKHEFFSPMEISRGCPFGCNYCQTPRIFGRRVRHRSVENILHFARE
HHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIGMREVYFGSFPSDVRPES
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCC
VSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRYGFTPYVDM
CCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
IFGFPFEEDSDIEKSFEVAYYLYEKYGAVIHGHTFMPLPGTPFENLKSKLSSKTLRELGR
HHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEECCCCCCCHHHHHHHHHHHHHHHHHH
LSAKGIMKGQWQNQITISQEISHSEPKGE
HHHCCCCCCCCCCCEEEHHHHCCCCCCCC
>Mature Secondary Structure
MKLVFVLSKTNRYSIAALFGAIEDLEVDVEVIGESEFINANYIGSDDAIIALSFMSPEAK
CEEEEEEECCCCEEHHHHHHHHHHCEEEEEEECCCCEECCCEECCCCCEEEEEECCCCCH
KNEKLIRKLSSAGNRVIVGGPHASAKPEEILGMGAYAVFVGEGERTLRKFLLNPTPGIWY
HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCCCH
GEKLQQLDTFPPFSLKHEFFSPMEISRGCPFGCNYCQTPRIFGRRVRHRSVENILHFARE
HHHHHHHCCCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SVERGRKVARFITPNAFGYGSKNGVTPNTKVIYELLSGMRKIGMREVYFGSFPSDVRPES
HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCC
VSDDVLAIVQEFCDNKVIVVGLQSGSDRILKQLNRGHDVQTAINTIRKISRYGFTPYVDM
CCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
IFGFPFEEDSDIEKSFEVAYYLYEKYGAVIHGHTFMPLPGTPFENLKSKLSSKTLRELGR
HHCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCEECCCCCCCHHHHHHHHHHHHHHHHHH
LSAKGIMKGQWQNQITISQEISHSEPKGE
HHHCCCCCCCCCCCEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]