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The map label for this gene is yddM [C]

Identifier: 239617683

GI number: 239617683

Start: 1390932

End: 1392050

Strand: Reverse

Name: yddM [C]

Synonym: Kole_1307

Alternate gene names: 239617683

Gene position: 1392050-1390932 (Counterclockwise)

Preceding gene: 239617684

Following gene: 239617682

Centisome position: 60.47

GC content: 37.8

Gene sequence:

>1119_bases
ATGGGTGAAATTAGACCAGGAAAAATCATAGGTCCTGGAAAACACATTAAAGATGAAATTGAATACCTTGGCTGGACTCA
GCAGGATCTCGCTGAGGTCATGGGCGTTTCTTTAAAAACCGTAAACCTATTGATACAAGATAAAACACCCATAACCTTTG
AACTTGCCGTTAAATTAAGCAAAGCCATAGGTGGTACTCCGAATACCTGGTTGAATTTATACAACATGTATAGATCAAGG
ATCGAAAATCTGGAATCCGAAGAAAACAAAGCGATCGAAGACCGATCTATTCTTTACCAATACCTGCCAATAAGAGAAAT
GAAAAAAAGAGGTTGGATAGATAACTCCCGTTCCTTCGAAAAAGTAAAAAAATCAATCTTGGAATTTTTCGGAGTGAAGA
ACCTTGAAGAACTAAAAGAGAAACTCCAAAAGAAAGATCTTGCCCCCGCATTTAGAAGATCTGAAGCACATCAAAACTTC
AACGGTTTTTACGCATATACCTGGTTCTTAATGGCAAAAAAGCTTTCAAAGCAAAAAAATCCTGGTTATGCCTATAATAA
AGAAAAGCTAGAGGAGTTGGCGTGCCAGATCGCAGAATACTCACTTTATCCCGAAGGTATAGAACGATTTCTAGAAGAAT
TAGAAAACACCGGTGTTAGGTTCATGGTCCTTCCCCATTTACAAAAAACCTATATTGACGGTGCCTCTTATATAGATGAA
TATGGTCCGGTAATCGTTTACACAAAAAGATACGACAGGATTGACAACTTCTGGTTTACCGTAGCTCACGAAATCGCACA
TATCCTCTACCATCATCTGGACGATGAAAAACCATTCATCGATAACCTTGCAGATTTAAGCGACAACGAAGCTGAAGTAG
AAGCGAATAACATTGCCGGTGAATGGTTAAAACGAGATCAAATTCTTGACTACTTCAAAGGCAGCTACGGGTACATATCA
GAAGTAAAGGTAAACCACTGTTCAAAAAAATTAAGAATACATCCAGCACTCGTTGTTGGAATATTGCAGCATTACGGAAA
ACTATCCAGAAAGAACCTCAACAGATTCAAAAAGAAAGTTGGTGAACTAATACCAGAGAAATATTATGTAGAAAAATAG

Upstream 100 bases:

>100_bases
ATCGGCTAGAAATTGAGATTGAGTGGATAGACAATAAACATACAATCGGAATATTTGGAATCGACGAAATTTCAAAACAC
TATGAATAAAGGTGAGAATC

Downstream 100 bases:

>100_bases
CAGGCTCTCACCCGGCTCCGTTTTACAAGAAAAGAACAATGAAACGGCATCTATTTCTCCATTATGAAAGGAGGAGCATT
TGGTCTTGGAGAATCCAGTT

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Plasmid Maintenance System Antidote Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcription Regulator With HTH Domain; Addiction Module Antidote Protein HigA Family; Transcription Regulator With HTH Domain Protein; Virulence-Associated Protein I; Plasmid Maintenance System Antidote Protein Xre Family; Plasmid-Related Protein

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MGEIRPGKIIGPGKHIKDEIEYLGWTQQDLAEVMGVSLKTVNLLIQDKTPITFELAVKLSKAIGGTPNTWLNLYNMYRSR
IENLESEENKAIEDRSILYQYLPIREMKKRGWIDNSRSFEKVKKSILEFFGVKNLEELKEKLQKKDLAPAFRRSEAHQNF
NGFYAYTWFLMAKKLSKQKNPGYAYNKEKLEELACQIAEYSLYPEGIERFLEELENTGVRFMVLPHLQKTYIDGASYIDE
YGPVIVYTKRYDRIDNFWFTVAHEIAHILYHHLDDEKPFIDNLADLSDNEAEVEANNIAGEWLKRDQILDYFKGSYGYIS
EVKVNHCSKKLRIHPALVVGILQHYGKLSRKNLNRFKKKVGELIPEKYYVEK

Sequences:

>Translated_372_residues
MGEIRPGKIIGPGKHIKDEIEYLGWTQQDLAEVMGVSLKTVNLLIQDKTPITFELAVKLSKAIGGTPNTWLNLYNMYRSR
IENLESEENKAIEDRSILYQYLPIREMKKRGWIDNSRSFEKVKKSILEFFGVKNLEELKEKLQKKDLAPAFRRSEAHQNF
NGFYAYTWFLMAKKLSKQKNPGYAYNKEKLEELACQIAEYSLYPEGIERFLEELENTGVRFMVLPHLQKTYIDGASYIDE
YGPVIVYTKRYDRIDNFWFTVAHEIAHILYHHLDDEKPFIDNLADLSDNEAEVEANNIAGEWLKRDQILDYFKGSYGYIS
EVKVNHCSKKLRIHPALVVGILQHYGKLSRKNLNRFKKKVGELIPEKYYVEK
>Mature_371_residues
GEIRPGKIIGPGKHIKDEIEYLGWTQQDLAEVMGVSLKTVNLLIQDKTPITFELAVKLSKAIGGTPNTWLNLYNMYRSRI
ENLESEENKAIEDRSILYQYLPIREMKKRGWIDNSRSFEKVKKSILEFFGVKNLEELKEKLQKKDLAPAFRRSEAHQNFN
GFYAYTWFLMAKKLSKQKNPGYAYNKEKLEELACQIAEYSLYPEGIERFLEELENTGVRFMVLPHLQKTYIDGASYIDEY
GPVIVYTKRYDRIDNFWFTVAHEIAHILYHHLDDEKPFIDNLADLSDNEAEVEANNIAGEWLKRDQILDYFKGSYGYISE
VKVNHCSKKLRIHPALVVGILQHYGKLSRKNLNRFKKKVGELIPEKYYVEK

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43552; Mature: 43421

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50943 HTH_CROC1 ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEIRPGKIIGPGKHIKDEIEYLGWTQQDLAEVMGVSLKTVNLLIQDKTPITFELAVKLS
CCCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHCCHHHHEEEEEECCCCEEHHHHHHHH
KAIGGTPNTWLNLYNMYRSRIENLESEENKAIEDRSILYQYLPIREMKKRGWIDNSRSFE
HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHH
KVKKSILEFFGVKNLEELKEKLQKKDLAPAFRRSEAHQNFNGFYAYTWFLMAKKLSKQKN
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
PGYAYNKEKLEELACQIAEYSLYPEGIERFLEELENTGVRFMVLPHLQKTYIDGASYIDE
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHCHHHHHHH
YGPVIVYTKRYDRIDNFWFTVAHEIAHILYHHLDDEKPFIDNLADLSDNEAEVEANNIAG
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEHHHHHH
EWLKRDQILDYFKGSYGYISEVKVNHCSKKLRIHPALVVGILQHYGKLSRKNLNRFKKKV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GELIPEKYYVEK
HHHCCCHHCCCC
>Mature Secondary Structure 
GEIRPGKIIGPGKHIKDEIEYLGWTQQDLAEVMGVSLKTVNLLIQDKTPITFELAVKLS
CCCCCCCEECCCCHHHHHHHHCCCCHHHHHHHHCCHHHHEEEEEECCCCEEHHHHHHHH
KAIGGTPNTWLNLYNMYRSRIENLESEENKAIEDRSILYQYLPIREMKKRGWIDNSRSFE
HHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHH
KVKKSILEFFGVKNLEELKEKLQKKDLAPAFRRSEAHQNFNGFYAYTWFLMAKKLSKQKN
HHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
PGYAYNKEKLEELACQIAEYSLYPEGIERFLEELENTGVRFMVLPHLQKTYIDGASYIDE
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHCHHHHHHH
YGPVIVYTKRYDRIDNFWFTVAHEIAHILYHHLDDEKPFIDNLADLSDNEAEVEANNIAG
CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCEEHHHHHH
EWLKRDQILDYFKGSYGYISEVKVNHCSKKLRIHPALVVGILQHYGKLSRKNLNRFKKKV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GELIPEKYYVEK
HHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA