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The map label for this gene is araQ [H]

Identifier: 239617584

GI number: 239617584

Start: 1278802

End: 1279689

Strand: Direct

Name: araQ [H]

Synonym: Kole_1203

Alternate gene names: 239617584

Gene position: 1278802-1279689 (Clockwise)

Preceding gene: 239617583

Following gene: 239617585

Centisome position: 55.55

GC content: 40.88

Gene sequence:

>888_bases
ATGAGAAAAAAATGGAGGATAGGTCTTACAATTTCATACATAATTTTGATAGCGTATGCTGCTGTTTCCCTTTTTCCCTT
TATTTGGTCTGCACTGGTATCTATAACTCCGATGAAATACACTGATGAAAACGGGATAGAACGCGGGTTTGACATAATGA
AATGGCCCCCGGATATCAACTTTTTCGAATGGCCAGTGAAAGTGTTCGGAGCACCGGGGACACTGGCTAACTACTTGCAA
ATTTTCAAAATAACTCCCTATGCCAGATGGATACTTAACACTATCATATATGCGGTACTGGTGACCGTAGGGCATTTACT
TTTTGATACCCTTGGAGGTTATGCTTTTGCGAGACTGAGGTTTCCGCTTAAAAATTTCTGGTTCACTATGTTTCTCGCCA
CGCTCATGATCCCGGGGCACGTTACGATGATTCCAAACTACAATCTCATGGTGAAGTTTGGCTTTGTGAACACTTATTAC
GGGCTTTTCATACCGAAACTAACGGGGGTTTTCGGTCTGTTCCTTATGCGCCAGTTCTTTTTGAGTATCCCGAGAGAATT
AGAAGAAGCTGCAAAAATGGATGGGGCATCGATATTTAGAACGTATATAAAAATAATCCTTCCTATTTCGAAACCGGCTA
TCGCTGCCCTTGCTATCTATACTTTCGTTGGAACGTGGAATGATTTTCTATGGCCCCTTCTTATGACCTCTGACAAAAAC
ATGTATACGTTAACTGTCGGGCTTGACTTCTATAGAACGAGTTATTATACTTTCTGGCAGTATATGATGGCTGCTTCTAT
ATTGATGACTATTCCAATGATTATAATCTTCCTGAGTTTCCAAAAATATTTCGTCGAGAGCAGTGTTTCGACAGGCTTAA
AGGGTTGA

Upstream 100 bases:

>100_bases
ATAGCTATGGTACTTTTTCTTATAATATTGGTTATAACTTCTATACAGAGAAAACTTGTCAAAGAGGAAGCGTTTTTTTG
ATGAAGGAGAGAGCACTCAC

Downstream 100 bases:

>100_bases
TTCCATGGAAGATCTTTACCTTTATGAGAGTGGAAGAAGAGTTTATTATTTTGGGCGCTCCAATGGTGACAACGAAGGTG
TCGGCTGGCATGTGAAAGGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRKKWRIGLTISYIILIAYAAVSLFPFIWSALVSITPMKYTDENGIERGFDIMKWPPDINFFEWPVKVFGAPGTLANYLQ
IFKITPYARWILNTIIYAVLVTVGHLLFDTLGGYAFARLRFPLKNFWFTMFLATLMIPGHVTMIPNYNLMVKFGFVNTYY
GLFIPKLTGVFGLFLMRQFFLSIPRELEEAAKMDGASIFRTYIKIILPISKPAIAALAIYTFVGTWNDFLWPLLMTSDKN
MYTLTVGLDFYRTSYYTFWQYMMAASILMTIPMIIIFLSFQKYFVESSVSTGLKG

Sequences:

>Translated_295_residues
MRKKWRIGLTISYIILIAYAAVSLFPFIWSALVSITPMKYTDENGIERGFDIMKWPPDINFFEWPVKVFGAPGTLANYLQ
IFKITPYARWILNTIIYAVLVTVGHLLFDTLGGYAFARLRFPLKNFWFTMFLATLMIPGHVTMIPNYNLMVKFGFVNTYY
GLFIPKLTGVFGLFLMRQFFLSIPRELEEAAKMDGASIFRTYIKIILPISKPAIAALAIYTFVGTWNDFLWPLLMTSDKN
MYTLTVGLDFYRTSYYTFWQYMMAASILMTIPMIIIFLSFQKYFVESSVSTGLKG
>Mature_295_residues
MRKKWRIGLTISYIILIAYAAVSLFPFIWSALVSITPMKYTDENGIERGFDIMKWPPDINFFEWPVKVFGAPGTLANYLQ
IFKITPYARWILNTIIYAVLVTVGHLLFDTLGGYAFARLRFPLKNFWFTMFLATLMIPGHVTMIPNYNLMVKFGFVNTYY
GLFIPKLTGVFGLFLMRQFFLSIPRELEEAAKMDGASIFRTYIKIILPISKPAIAALAIYTFVGTWNDFLWPLLMTSDKN
MYTLTVGLDFYRTSYYTFWQYMMAASILMTIPMIIIFLSFQKYFVESSVSTGLKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=36.0576923076923, Blast_Score=141, Evalue=6e-35,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=29.4930875576037, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787571, Length=226, Percent_Identity=28.3185840707965, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34120; Mature: 34120

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKWRIGLTISYIILIAYAAVSLFPFIWSALVSITPMKYTDENGIERGFDIMKWPPDIN
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCC
FFEWPVKVFGAPGTLANYLQIFKITPYARWILNTIIYAVLVTVGHLLFDTLGGYAFARLR
CEECCHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPLKNFWFTMFLATLMIPGHVTMIPNYNLMVKFGFVNTYYGLFIPKLTGVFGLFLMRQFF
CCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIPRELEEAAKMDGASIFRTYIKIILPISKPAIAALAIYTFVGTWNDFLWPLLMTSDKN
HHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCC
MYTLTVGLDFYRTSYYTFWQYMMAASILMTIPMIIIFLSFQKYFVESSVSTGLKG
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRKKWRIGLTISYIILIAYAAVSLFPFIWSALVSITPMKYTDENGIERGFDIMKWPPDIN
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEECCCCCC
FFEWPVKVFGAPGTLANYLQIFKITPYARWILNTIIYAVLVTVGHLLFDTLGGYAFARLR
CEECCHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FPLKNFWFTMFLATLMIPGHVTMIPNYNLMVKFGFVNTYYGLFIPKLTGVFGLFLMRQFF
CCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
LSIPRELEEAAKMDGASIFRTYIKIILPISKPAIAALAIYTFVGTWNDFLWPLLMTSDKN
HHCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCC
MYTLTVGLDFYRTSYYTFWQYMMAASILMTIPMIIIFLSFQKYFVESSVSTGLKG
EEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]