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The map label for this gene is ugpB [C]

Identifier: 239617563

GI number: 239617563

Start: 1253413

End: 1254654

Strand: Reverse

Name: ugpB [C]

Synonym: Kole_1181

Alternate gene names: 239617563

Gene position: 1254654-1253413 (Counterclockwise)

Preceding gene: 239617564

Following gene: 239617562

Centisome position: 54.5

GC content: 41.71

Gene sequence:

>1242_bases
ATGAAAAAATGGTTAGTGCTTGTGTGTGTGGTGATGCTTACCACTTTCATAATGGCAAAGAATGTGACCATCGAAGTTTG
GACCCTCTCATTGAGCCCAACCTTTGACGACTATCTTAATGCTGTCGTTGAAAGTTTTGAAAAAGCAAATCCTGGCATCA
AGGTTAACCTTGTAGACATACCTTATGGTGCAGCACTCCAAAAATTGCAAGCTGCTATTGCCGCTGGAAAGGCTCCAGAC
GCTGTTAATTTAAATACCCCCTGGACAATAGACCTGGCAGCTATGGAAGCTCTTCAACCAATCGATAATTACGTTACGGA
AGTTGAAAAGTACCTTTATTGGGAAAAATTGTGGAATGCTACAGTGATTGATGGAAAGTCTTATGCCGTTCCGTGGTACG
GCAGTCCTATGGTTCTGATATACAACAGGCAGATTTTCGACGAAGCAGGTCTTGATCCCGATAATCCACCAGAAACTTTT
GAAGAAATGCTTGAGGTATCGAGAATAATCAGAGAAAGAACTGGTGTATACGGATTTGAACCTAACATCAATGGATATAT
GGATTTAATTGCAGAAGGAGTACCAATGGTTACCCCGGATGGCAAGAAAGCTGCATTTAATACCCCTAAAGCAATTGAAA
AACTCAAATGGTATCAAACTCTTTACAATGAGGAACTCATACCCAGATCACTTGGTGGCTACATCGCTGGTAAGCAAGAC
TATTCCGCTGGTAAGATTGCCATGTATCCTGTTGGAATAACAATGCTGAAGCATATCCAGGTAAACAGTCCAAGTATTTT
TGCGGTTACCGATGTTGCACCACATCCGATAGGAGACGGAAAAATCTTGAAGAATTCTATCATGAATTTCTCTATTCCAG
TTAATGCCAAGCATCCAAGAGAAGCTGTTAAGTTTGTACTGTGGATGACTTCGCCCTATTGGCAGATTCAATTCGGTCGA
TATGCGACCATACTTCCCTCAACCAAGATCAGCTACGATTCTGACATATGGTTCATTGAAAATGCTGAAACTGATCTACT
CATCAAGGCTCAGGTTATGGCCGCTAAAGCTTCCGGTTATGCCGCTGATATAAGCAGAATACCTGGGCTTGACCCAGAAA
AACATGGCGAATTCACCAGAATACTGAACGATTACTTCGTGAAGGCTATTAAAGGAGAGTATACAGCCGAAGAAGCTCTT
GCAAAAGCTGAAGAAGAAATCAACAAGCTCCTTAAAAAGTAG

Upstream 100 bases:

>100_bases
GACGTGAACGCAAAAAACGTCAAAACAGTACTTAAGACTATCAGTAATAGATCTTTTCCAAACTACCCCTGATTTTGGGG
AAACTCGGGAGGTGCGTACT

Downstream 100 bases:

>100_bases
TTGATGATCAAATTTGACATGGGGGGATTTCCTCCCCCCGTGTTTTAAGTATGACTTCCGTTGAGGTTTTTCGTAGAGAG
TTTCTGGACTTTTTTGGGAG

Product: extracellular solute-binding protein family 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MKKWLVLVCVVMLTTFIMAKNVTIEVWTLSLSPTFDDYLNAVVESFEKANPGIKVNLVDIPYGAALQKLQAAIAAGKAPD
AVNLNTPWTIDLAAMEALQPIDNYVTEVEKYLYWEKLWNATVIDGKSYAVPWYGSPMVLIYNRQIFDEAGLDPDNPPETF
EEMLEVSRIIRERTGVYGFEPNINGYMDLIAEGVPMVTPDGKKAAFNTPKAIEKLKWYQTLYNEELIPRSLGGYIAGKQD
YSAGKIAMYPVGITMLKHIQVNSPSIFAVTDVAPHPIGDGKILKNSIMNFSIPVNAKHPREAVKFVLWMTSPYWQIQFGR
YATILPSTKISYDSDIWFIENAETDLLIKAQVMAAKASGYAADISRIPGLDPEKHGEFTRILNDYFVKAIKGEYTAEEAL
AKAEEEINKLLKK

Sequences:

>Translated_413_residues
MKKWLVLVCVVMLTTFIMAKNVTIEVWTLSLSPTFDDYLNAVVESFEKANPGIKVNLVDIPYGAALQKLQAAIAAGKAPD
AVNLNTPWTIDLAAMEALQPIDNYVTEVEKYLYWEKLWNATVIDGKSYAVPWYGSPMVLIYNRQIFDEAGLDPDNPPETF
EEMLEVSRIIRERTGVYGFEPNINGYMDLIAEGVPMVTPDGKKAAFNTPKAIEKLKWYQTLYNEELIPRSLGGYIAGKQD
YSAGKIAMYPVGITMLKHIQVNSPSIFAVTDVAPHPIGDGKILKNSIMNFSIPVNAKHPREAVKFVLWMTSPYWQIQFGR
YATILPSTKISYDSDIWFIENAETDLLIKAQVMAAKASGYAADISRIPGLDPEKHGEFTRILNDYFVKAIKGEYTAEEAL
AKAEEEINKLLKK
>Mature_413_residues
MKKWLVLVCVVMLTTFIMAKNVTIEVWTLSLSPTFDDYLNAVVESFEKANPGIKVNLVDIPYGAALQKLQAAIAAGKAPD
AVNLNTPWTIDLAAMEALQPIDNYVTEVEKYLYWEKLWNATVIDGKSYAVPWYGSPMVLIYNRQIFDEAGLDPDNPPETF
EEMLEVSRIIRERTGVYGFEPNINGYMDLIAEGVPMVTPDGKKAAFNTPKAIEKLKWYQTLYNEELIPRSLGGYIAGKQD
YSAGKIAMYPVGITMLKHIQVNSPSIFAVTDVAPHPIGDGKILKNSIMNFSIPVNAKHPREAVKFVLWMTSPYWQIQFGR
YATILPSTKISYDSDIWFIENAETDLLIKAQVMAAKASGYAADISRIPGLDPEKHGEFTRILNDYFVKAIKGEYTAEEAL
AKAEEEINKLLKK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46297; Mature: 46297

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLVLVCVVMLTTFIMAKNVTIEVWTLSLSPTFDDYLNAVVESFEKANPGIKVNLVDI
CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEC
PYGAALQKLQAAIAAGKAPDAVNLNTPWTIDLAAMEALQPIDNYVTEVEKYLYWEKLWNA
CCHHHHHHHHHHHHCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVIDGKSYAVPWYGSPMVLIYNRQIFDEAGLDPDNPPETFEEMLEVSRIIRERTGVYGFE
EEECCCEEECCCCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PNINGYMDLIAEGVPMVTPDGKKAAFNTPKAIEKLKWYQTLYNEELIPRSLGGYIAGKQD
CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
YSAGKIAMYPVGITMLKHIQVNSPSIFAVTDVAPHPIGDGKILKNSIMNFSIPVNAKHPR
CCCCCEEEEECCEEHHHEEECCCCCEEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCHH
EAVKFVLWMTSPYWQIQFGRYATILPSTKISYDSDIWFIENAETDLLIKAQVMAAKASGY
HHHEEEEEECCCCEEEEECCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC
AADISRIPGLDPEKHGEFTRILNDYFVKAIKGEYTAEEALAKAEEEINKLLKK
HHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKWLVLVCVVMLTTFIMAKNVTIEVWTLSLSPTFDDYLNAVVESFEKANPGIKVNLVDI
CCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEC
PYGAALQKLQAAIAAGKAPDAVNLNTPWTIDLAAMEALQPIDNYVTEVEKYLYWEKLWNA
CCHHHHHHHHHHHHCCCCCCCEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TVIDGKSYAVPWYGSPMVLIYNRQIFDEAGLDPDNPPETFEEMLEVSRIIRERTGVYGFE
EEECCCEEECCCCCCCEEEEEECHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
PNINGYMDLIAEGVPMVTPDGKKAAFNTPKAIEKLKWYQTLYNEELIPRSLGGYIAGKQD
CCCCHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCC
YSAGKIAMYPVGITMLKHIQVNSPSIFAVTDVAPHPIGDGKILKNSIMNFSIPVNAKHPR
CCCCCEEEEECCEEHHHEEECCCCCEEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCHH
EAVKFVLWMTSPYWQIQFGRYATILPSTKISYDSDIWFIENAETDLLIKAQVMAAKASGY
HHHEEEEEECCCCEEEEECCEEEECCCCCCCCCCCEEEEECCCCCEEEEEEEEHHHCCCC
AADISRIPGLDPEKHGEFTRILNDYFVKAIKGEYTAEEALAKAEEEINKLLKK
HHHHHHCCCCCCHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA