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The map label for this gene is araQ [H]

Identifier: 239617561

GI number: 239617561

Start: 1251249

End: 1252082

Strand: Reverse

Name: araQ [H]

Synonym: Kole_1179

Alternate gene names: 239617561

Gene position: 1252082-1251249 (Counterclockwise)

Preceding gene: 239617562

Following gene: 239617560

Centisome position: 54.39

GC content: 40.29

Gene sequence:

>834_bases
ATGAAGAAAATAAGTACAAAAAGATTAGCAAAGTTTTTATTCTCCTACACAATTCTGATTTTACTTGCTGTGTTTTTTGC
TTTTCCATTCTTCTGGGTGCTTTCAACCTCTCTAAAAACAGCTGTGGATGTATTCAGCTGGCCGCCCAAATGGATACCCA
ACCCACCAACTCTGGAGAATTATCAAATGGTTCTCAAAAAACTGCCTATACTCAGGTATTTCCTAAACACATTGATAATA
ACGGGAATGGGTATTCTGTTTAACGTTGTTCTTGCTGCATTAGCCGCTTATCCGCTAGCGAGGTTGAATTTTAAGGGTAG
AAACCTTATATTTGCAATAATACTTTTGCCAATGATGATCCCCATGCAAGGGGGGCTTATAGTCAATTTTATTACTATAA
TCAAATTACATCTATACGATACTTTTCTGGCAGTTGTGTTGCCTGGAGCGGTCTCAATCTTCGGGATTTTCTTAATGAGA
CAGCATTACCAGTCCGTCCCCAAGGAGCTAGAGGATGCTGCAAGAATCGATGGTTGCAATGAATTTCAGCTATGGTGGAA
AATCATGCTCCCCATGGTCAGACCTGCCATCACCGCACTTGCAATATTCTCATTTGCAGCTTATTGGAATGCATTCCTCT
GGCCATTAATCGTTTTGCAAGACTCCAACAAATATCCTTTGCAAGTGGGCCTATCCTATCTTAGTAGCACCTTCGAAGGA
AACTTCAGACAAATATCCGCAGGTATTATTATCGCAGCAGTGCCCATTTTGGTTTTCTTTTTCTTCACCCAGAGGTTCTT
TATTGAAGGTTACCAGGGTGCTTTAAAACAATGA

Upstream 100 bases:

>100_bases
ACTTTGGTGAATCAGCGGCAATAGCTATTGTGCTCTCAATGATGATCGCCGTGTTTACGGTGATTAACTTCAAATTCTTC
GGCGCAGGGAGAGAAAAAAC

Downstream 100 bases:

>100_bases
CAAACGAGGTGATGGTGATGAAGAGATATTTTCTGCTTGTAGTTGTATTGGTGATTTCTGTTCTTGCTTACAGCAATATT
GCTGTCTTTGTCTCTAAGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MKKISTKRLAKFLFSYTILILLAVFFAFPFFWVLSTSLKTAVDVFSWPPKWIPNPPTLENYQMVLKKLPILRYFLNTLII
TGMGILFNVVLAALAAYPLARLNFKGRNLIFAIILLPMMIPMQGGLIVNFITIIKLHLYDTFLAVVLPGAVSIFGIFLMR
QHYQSVPKELEDAARIDGCNEFQLWWKIMLPMVRPAITALAIFSFAAYWNAFLWPLIVLQDSNKYPLQVGLSYLSSTFEG
NFRQISAGIIIAAVPILVFFFFTQRFFIEGYQGALKQ

Sequences:

>Translated_277_residues
MKKISTKRLAKFLFSYTILILLAVFFAFPFFWVLSTSLKTAVDVFSWPPKWIPNPPTLENYQMVLKKLPILRYFLNTLII
TGMGILFNVVLAALAAYPLARLNFKGRNLIFAIILLPMMIPMQGGLIVNFITIIKLHLYDTFLAVVLPGAVSIFGIFLMR
QHYQSVPKELEDAARIDGCNEFQLWWKIMLPMVRPAITALAIFSFAAYWNAFLWPLIVLQDSNKYPLQVGLSYLSSTFEG
NFRQISAGIIIAAVPILVFFFFTQRFFIEGYQGALKQ
>Mature_277_residues
MKKISTKRLAKFLFSYTILILLAVFFAFPFFWVLSTSLKTAVDVFSWPPKWIPNPPTLENYQMVLKKLPILRYFLNTLII
TGMGILFNVVLAALAAYPLARLNFKGRNLIFAIILLPMMIPMQGGLIVNFITIIKLHLYDTFLAVVLPGAVSIFGIFLMR
QHYQSVPKELEDAARIDGCNEFQLWWKIMLPMVRPAITALAIFSFAAYWNAFLWPLIVLQDSNKYPLQVGLSYLSSTFEG
NFRQISAGIIIAAVPILVFFFFTQRFFIEGYQGALKQ

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=272, Percent_Identity=30.1470588235294, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=26.4705882352941, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31672; Mature: 31672

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]