| Definition | Kosmotoga olearia TBF 19.5.1, complete genome. |
|---|---|
| Accession | NC_012785 |
| Length | 2,302,126 |
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The map label for this gene is 239617499
Identifier: 239617499
GI number: 239617499
Start: 1183900
End: 1184676
Strand: Direct
Name: 239617499
Synonym: Kole_1115
Alternate gene names: NA
Gene position: 1183900-1184676 (Clockwise)
Preceding gene: 239617498
Following gene: 239617500
Centisome position: 51.43
GC content: 42.21
Gene sequence:
>777_bases ATGGGTGTATTCAAAGCTCTTCTTGTTGCAAGTTTGAAATCTCAAATCGAATACCGCGTCAATTTTTACGTTGATATGAT CGTAAGCGGGCTCGCGATGTTCAGTGATTTTCTCATAATTGCGTTTATGATGCTTACCTTTAAAGATATGGGAGGATGGT CACTTTCCGAAGTAGCAATTATCTACTCGATCGTAGAAGCTGGTTGGGGGATCTTTAGAATTTTTGGAGACGGCATCCTT CGTTTCCAGGATTTGATCATCACCGGACGTTTTGATGCTATTCTTGTCAGGCCGATTTCAACGATCAAACAACTTATTCT CCAGCGAATAGAACTAAGACGAATGGGCGATATTATTCAGGCTGTGGGTCTCGGTGCATTTGGAATCACGTACGCTGGTA TGTGGAATGTTAGATTCATTCTGTGGTATATCGTCCTGGTAGCTTTTTCAGCAGTTATTCATTTCTGCATCAATCTATTA CTCGCAACGGTAGCTTTCTGGTCAGTTAGGAATGAAGATATCAGGGTTGTGGCTTTTTATTCTACAAAAGCGGCGGCAGC TTATCCGATAAGTATCTACGGCCCTTTTCTGAGAAATATACTTACCTTTGTTATTCCATTGGCAACCATTGCTTATTATC CTCTCGCCTATTTGTTGCACAAAACGAACGACATCTTTGCTCTCTTTGCCCCATTTATTACGGTTTCCGTGCTCGTCCCT GTAACATTTCTACTCTGGGGAACCGGAGTAAAACATTACACCAGCACGGGAACGTAG
Upstream 100 bases:
>100_bases GCTTTTGGGATCCAGTGGTTCTGGATACTCACGTTGGGGCTTACAGCTTTTGGACTTACCGAGCTTATAAAAAAAGAAAT CAGGATCCAGGGGGGATAAA
Downstream 100 bases:
>100_bases CGGTTACACAGGAGGTGATCATTATGGATGATTTTATTGAAGTGAAAGAGCTACAAAAAAATTACACGGTTTATGAAAGA ACAGGACTGAAAAGGAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Integral Membrane Transporter; ABC-Type Transport System Permease Component; ABC Transporter Transmembrane Subunit; ABC Transporter Transmembrane Component; Transmembrane Component Of ABC Transporter; ABC Transporter; ABC Transporter Permease Protein
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MGVFKALLVASLKSQIEYRVNFYVDMIVSGLAMFSDFLIIAFMMLTFKDMGGWSLSEVAIIYSIVEAGWGIFRIFGDGIL RFQDLIITGRFDAILVRPISTIKQLILQRIELRRMGDIIQAVGLGAFGITYAGMWNVRFILWYIVLVAFSAVIHFCINLL LATVAFWSVRNEDIRVVAFYSTKAAAAYPISIYGPFLRNILTFVIPLATIAYYPLAYLLHKTNDIFALFAPFITVSVLVP VTFLLWGTGVKHYTSTGT
Sequences:
>Translated_258_residues MGVFKALLVASLKSQIEYRVNFYVDMIVSGLAMFSDFLIIAFMMLTFKDMGGWSLSEVAIIYSIVEAGWGIFRIFGDGIL RFQDLIITGRFDAILVRPISTIKQLILQRIELRRMGDIIQAVGLGAFGITYAGMWNVRFILWYIVLVAFSAVIHFCINLL LATVAFWSVRNEDIRVVAFYSTKAAAAYPISIYGPFLRNILTFVIPLATIAYYPLAYLLHKTNDIFALFAPFITVSVLVP VTFLLWGTGVKHYTSTGT >Mature_257_residues GVFKALLVASLKSQIEYRVNFYVDMIVSGLAMFSDFLIIAFMMLTFKDMGGWSLSEVAIIYSIVEAGWGIFRIFGDGILR FQDLIITGRFDAILVRPISTIKQLILQRIELRRMGDIIQAVGLGAFGITYAGMWNVRFILWYIVLVAFSAVIHFCINLLL ATVAFWSVRNEDIRVVAFYSTKAAAAYPISIYGPFLRNILTFVIPLATIAYYPLAYLLHKTNDIFALFAPFITVSVLVPV TFLLWGTGVKHYTSTGT
Specific function: Unknown
COG id: COG3694
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29005; Mature: 28874
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVFKALLVASLKSQIEYRVNFYVDMIVSGLAMFSDFLIIAFMMLTFKDMGGWSLSEVAI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH IYSIVEAGWGIFRIFGDGILRFQDLIITGRFDAILVRPISTIKQLILQRIELRRMGDIIQ HHHHHHHCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVGLGAFGITYAGMWNVRFILWYIVLVAFSAVIHFCINLLLATVAFWSVRNEDIRVVAFY HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE STKAAAAYPISIYGPFLRNILTFVIPLATIAYYPLAYLLHKTNDIFALFAPFITVSVLVP ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VTFLLWGTGVKHYTSTGT HHHHHHCCCCCCCCCCCC >Mature Secondary Structure GVFKALLVASLKSQIEYRVNFYVDMIVSGLAMFSDFLIIAFMMLTFKDMGGWSLSEVAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH IYSIVEAGWGIFRIFGDGILRFQDLIITGRFDAILVRPISTIKQLILQRIELRRMGDIIQ HHHHHHHCCHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVGLGAFGITYAGMWNVRFILWYIVLVAFSAVIHFCINLLLATVAFWSVRNEDIRVVAFY HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE STKAAAAYPISIYGPFLRNILTFVIPLATIAYYPLAYLLHKTNDIFALFAPFITVSVLVP ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH VTFLLWGTGVKHYTSTGT HHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA