Click here to switch to the map view.

The map label for this gene is ykfC [H]

Identifier: 239617431

GI number: 239617431

Start: 1110203

End: 1111474

Strand: Direct

Name: ykfC [H]

Synonym: Kole_1043

Alternate gene names: 239617431

Gene position: 1110203-1111474 (Clockwise)

Preceding gene: 239617430

Following gene: 239617432

Centisome position: 48.23

GC content: 41.75

Gene sequence:

>1272_bases
ATGAGGAAGTACTACAGTCTTATTGACAAAGTTTATCTGGAAGCGAACCTGGTCAAAGCATATCACAAGGTGCGGAAGAA
CAACGGAGCACCTGGGATAGATGGAGTAACGGTTCAGGAGTATGGAGAAAACCTTCTGGAAAGGATTAAGAAACTCAGCG
AAAAGTTGCGAAAAGGAGAATACCGGCCTTCACCGGTAAAAAGGGTAGAAATCCCGAAAGGAAATGGGAAGACACGTATG
CTCGGGATACCGACGGTAGAGGATCGAATAGTACAACAATCGCTGAAAGAAATAATGGAACCAATCTTTGAGGAAGGATT
TCATCCTTCAAGTTATGGATACAGGAAAGGAAGGAATCCACACCAGGCAGTAGAGAAAGCCTATGCCTTCGCGTGCAAAT
ACAAAATGAAATACGTGGTACAGTTAGACCTTAGTCAATGCTTTGACACCTTAGACCACGAAAAGATGATAGACGCAGTA
GCGGAAAGAATAAGCGATGGCAAAATATTGAGACTAATAAGAAGTTTCCTCAAAAGTGGAGTCATAACAGACCAATACCA
ACCCAGTGAGATGGGAAGTCCACAGGGCGGAGTAATAAGCCCCCTGCTATCCAACATCTATCTGAACAAATTTGACCAGA
AAATGATGGCCAGAGGAATAAGGATAGTGAGATATGCAGATGACATACTAATCTTCGCAAAGAGCTACAAAAGCGCGGAA
AAATATCTGAGAATAGCTATCCGAATACTGGAAAAAGAGCTGAAATTGAAGGTCAACAAAGAAAAGACGAGAATAACCAC
GATAGATGATGGAATCGAATTTCTTGGATTCACCATACAAAAAGGCAAAATACGAATCCAGGAAAAGAAAATAAAGAGGT
TCAAAGCCAAAGCAAAAACACTCACCCGAAGAAACCAATGTACACCGATCGGAGAGATAATAAAACGACTAAACCAATTG
CTGAGAGGCTTCAGCAATTACTACAAAATAATCGACTGGGTGGGAGTATTCAGAGACCTCATGGGTTGGATAAGAAGGAG
ATTGAGAGCCATAATCCTGCGACAATGGAAAACGACAAAGAAACTACGCAGGGTGATGAGACAAAAAGGATACAGAGGCG
AAATATCCGGAATAAGAATGAACAAATGGAGAAGCTCTCGATCGCGATTGGTCAGTAGACTACTGCCTAACAAATATTTT
CAGAAGATAGGGCTGTATGATATGAAGCTTTCACATGTACCACTGTCGGAGAATCCGATACTCAATCCATGA

Upstream 100 bases:

>100_bases
GAAGATTCCCGGGGGGGGGGTAAAGAATCCAATCTTTGGATGGGAGAAGAAACCGATTCTGTTATATGCGACTTATCCGG
AAGGCCATACAGGAGGAAAC

Downstream 100 bases:

>100_bases
GCCGTGTACGTTGGCCCGTACGCACGGTTCTGTGAGAGGACGGGGGGATTCCCCCGGGTCTGTTAGCAATTTTGTGTAAA
CTCCCTCCGAAATATGAGAA

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MRKYYSLIDKVYLEANLVKAYHKVRKNNGAPGIDGVTVQEYGENLLERIKKLSEKLRKGEYRPSPVKRVEIPKGNGKTRM
LGIPTVEDRIVQQSLKEIMEPIFEEGFHPSSYGYRKGRNPHQAVEKAYAFACKYKMKYVVQLDLSQCFDTLDHEKMIDAV
AERISDGKILRLIRSFLKSGVITDQYQPSEMGSPQGGVISPLLSNIYLNKFDQKMMARGIRIVRYADDILIFAKSYKSAE
KYLRIAIRILEKELKLKVNKEKTRITTIDDGIEFLGFTIQKGKIRIQEKKIKRFKAKAKTLTRRNQCTPIGEIIKRLNQL
LRGFSNYYKIIDWVGVFRDLMGWIRRRLRAIILRQWKTTKKLRRVMRQKGYRGEISGIRMNKWRSSRSRLVSRLLPNKYF
QKIGLYDMKLSHVPLSENPILNP

Sequences:

>Translated_423_residues
MRKYYSLIDKVYLEANLVKAYHKVRKNNGAPGIDGVTVQEYGENLLERIKKLSEKLRKGEYRPSPVKRVEIPKGNGKTRM
LGIPTVEDRIVQQSLKEIMEPIFEEGFHPSSYGYRKGRNPHQAVEKAYAFACKYKMKYVVQLDLSQCFDTLDHEKMIDAV
AERISDGKILRLIRSFLKSGVITDQYQPSEMGSPQGGVISPLLSNIYLNKFDQKMMARGIRIVRYADDILIFAKSYKSAE
KYLRIAIRILEKELKLKVNKEKTRITTIDDGIEFLGFTIQKGKIRIQEKKIKRFKAKAKTLTRRNQCTPIGEIIKRLNQL
LRGFSNYYKIIDWVGVFRDLMGWIRRRLRAIILRQWKTTKKLRRVMRQKGYRGEISGIRMNKWRSSRSRLVSRLLPNKYF
QKIGLYDMKLSHVPLSENPILNP
>Mature_423_residues
MRKYYSLIDKVYLEANLVKAYHKVRKNNGAPGIDGVTVQEYGENLLERIKKLSEKLRKGEYRPSPVKRVEIPKGNGKTRM
LGIPTVEDRIVQQSLKEIMEPIFEEGFHPSSYGYRKGRNPHQAVEKAYAFACKYKMKYVVQLDLSQCFDTLDHEKMIDAV
AERISDGKILRLIRSFLKSGVITDQYQPSEMGSPQGGVISPLLSNIYLNKFDQKMMARGIRIVRYADDILIFAKSYKSAE
KYLRIAIRILEKELKLKVNKEKTRITTIDDGIEFLGFTIQKGKIRIQEKKIKRFKAKAKTLTRRNQCTPIGEIIKRLNQL
LRGFSNYYKIIDWVGVFRDLMGWIRRRLRAIILRQWKTTKKLRRVMRQKGYRGEISGIRMNKWRSSRSRLVSRLLPNKYF
QKIGLYDMKLSHVPLSENPILNP

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=373, Percent_Identity=28.1501340482574, Blast_Score=136, Evalue=7e-33,
Organism=Saccharomyces cerevisiae, GI6226520, Length=363, Percent_Identity=26.9972451790634, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49488; Mature: 49488

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYYSLIDKVYLEANLVKAYHKVRKNNGAPGIDGVTVQEYGENLLERIKKLSEKLRKGE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
YRPSPVKRVEIPKGNGKTRMLGIPTVEDRIVQQSLKEIMEPIFEEGFHPSSYGYRKGRNP
CCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
HQAVEKAYAFACKYKMKYVVQLDLSQCFDTLDHEKMIDAVAERISDGKILRLIRSFLKSG
HHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VITDQYQPSEMGSPQGGVISPLLSNIYLNKFDQKMMARGIRIVRYADDILIFAKSYKSAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHH
KYLRIAIRILEKELKLKVNKEKTRITTIDDGIEFLGFTIQKGKIRIQEKKIKRFKAKAKT
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHEEECCCEEEHHHHHHHHHHHHHH
LTRRNQCTPIGEIIKRLNQLLRGFSNYYKIIDWVGVFRDLMGWIRRRLRAIILRQWKTTK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRRVMRQKGYRGEISGIRMNKWRSSRSRLVSRLLPNKYFQKIGLYDMKLSHVPLSENPI
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCC
LNP
CCC
>Mature Secondary Structure
MRKYYSLIDKVYLEANLVKAYHKVRKNNGAPGIDGVTVQEYGENLLERIKKLSEKLRKGE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
YRPSPVKRVEIPKGNGKTRMLGIPTVEDRIVQQSLKEIMEPIFEEGFHPSSYGYRKGRNP
CCCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
HQAVEKAYAFACKYKMKYVVQLDLSQCFDTLDHEKMIDAVAERISDGKILRLIRSFLKSG
HHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
VITDQYQPSEMGSPQGGVISPLLSNIYLNKFDQKMMARGIRIVRYADDILIFAKSYKSAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHHHHHHH
KYLRIAIRILEKELKLKVNKEKTRITTIDDGIEFLGFTIQKGKIRIQEKKIKRFKAKAKT
HHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHEEECCCEEEHHHHHHHHHHHHHH
LTRRNQCTPIGEIIKRLNQLLRGFSNYYKIIDWVGVFRDLMGWIRRRLRAIILRQWKTTK
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRRVMRQKGYRGEISGIRMNKWRSSRSRLVSRLLPNKYFQKIGLYDMKLSHVPLSENPI
HHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCCC
LNP
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]