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The map label for this gene is agaR [H]

Identifier: 239617129

GI number: 239617129

Start: 783080

End: 783844

Strand: Direct

Name: agaR [H]

Synonym: Kole_0733

Alternate gene names: 239617129

Gene position: 783080-783844 (Clockwise)

Preceding gene: 239617128

Following gene: 239617130

Centisome position: 34.02

GC content: 38.56

Gene sequence:

>765_bases
TTGACAGTTATTGAGAGAAGGGAAAAAATTCTCCAGATTCTGAAAGCCCAAAAGAAAATAGACATTAAGTTTCTTGCAAA
AATGATCGATGTTTCAGAAGTTACCGTAAGAAGGGATATAAGAATTCTTGAGAGAGAAGGAAAACTGCTGCGCAGTCGAG
GAGTAATCATACTACCTGACGTCTCAGAATACGAGTTGTCCTTTATGGAAAGAGAAAAAGAGAACGTTGATTTGAAAAGA
AAAATAGCCAGAGAAGCGATTAACTTCGTGAAAGAGGGAATGGTGGTAGGATTCGATGCAAGCACTACGGCTTTACAGAT
CGCGAAACTGGTAATAGAAAAGGGAATAAATATTACACTGGTTACCACCAGCTTGCCAATCTTTCGTTTGGTTACGTACT
CTAACAGAGCGAACGTCATACTTATCGGCGGGGAATATGACATGAAAAATCTATCTTTCGTTGGTCCTATTACCATTAGA
AACCTTGATATGTTCTGCTTTAACCTTTGCTTCATTGGTGCAAGTACCATAATTCCCGAGCGAGGGTTTTTCACACCGGA
TTCCAGAGGTGCGGAAGTAATAAGACATTTTGCATTGAACAGTTCAAAAGTAATAGGCGTAACGGATAGTTCGAAATTTA
AAAAAAGCGCTCAATACCTGTCGGTAGACATTAAGCAAATAGATGTTGTGATAACCGATGACAAATTCAATGGGGAATAC
TTAAAAAGATTTCCATCCAGTGTGAAGGTCATTATGGCTAAATAA

Upstream 100 bases:

>100_bases
ATAACGGTTTTTCTCGAATCTCGGGTCTCGGATTCTCGGTTCTCGGACGTTACGTACAACGCACAACGTACAACGGTAAA
TCAGAACGGAGGGAAATACC

Downstream 100 bases:

>100_bases
TTCGTTGATTGGGTACCTCCCGTGAAGCTATGGGGGTGATTGTTTTGGAGGGGCCAAGAGGACTTAGAAAGGGAGAAATT
GATTCTGCTGTTGAACTTGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTVIERREKILQILKAQKKIDIKFLAKMIDVSEVTVRRDIRILEREGKLLRSRGVIILPDVSEYELSFMEREKENVDLKR
KIAREAINFVKEGMVVGFDASTTALQIAKLVIEKGINITLVTTSLPIFRLVTYSNRANVILIGGEYDMKNLSFVGPITIR
NLDMFCFNLCFIGASTIIPERGFFTPDSRGAEVIRHFALNSSKVIGVTDSSKFKKSAQYLSVDIKQIDVVITDDKFNGEY
LKRFPSSVKVIMAK

Sequences:

>Translated_254_residues
MTVIERREKILQILKAQKKIDIKFLAKMIDVSEVTVRRDIRILEREGKLLRSRGVIILPDVSEYELSFMEREKENVDLKR
KIAREAINFVKEGMVVGFDASTTALQIAKLVIEKGINITLVTTSLPIFRLVTYSNRANVILIGGEYDMKNLSFVGPITIR
NLDMFCFNLCFIGASTIIPERGFFTPDSRGAEVIRHFALNSSKVIGVTDSSKFKKSAQYLSVDIKQIDVVITDDKFNGEY
LKRFPSSVKVIMAK
>Mature_253_residues
TVIERREKILQILKAQKKIDIKFLAKMIDVSEVTVRRDIRILEREGKLLRSRGVIILPDVSEYELSFMEREKENVDLKRK
IAREAINFVKEGMVVGFDASTTALQIAKLVIEKGINITLVTTSLPIFRLVTYSNRANVILIGGEYDMKNLSFVGPITIRN
LDMFCFNLCFIGASTIIPERGFFTPDSRGAEVIRHFALNSSKVIGVTDSSKFKKSAQYLSVDIKQIDVVITDDKFNGEYL
KRFPSSVKVIMAK

Specific function: Probable repressor for the aga operon for N-acetyl galactosamine transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=28.6852589641434, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1787540, Length=242, Percent_Identity=31.404958677686, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI226510968, Length=236, Percent_Identity=28.8135593220339, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789059, Length=230, Percent_Identity=29.1304347826087, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789170, Length=237, Percent_Identity=27.4261603375527, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788069, Length=242, Percent_Identity=26.4462809917355, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787063, Length=240, Percent_Identity=29.1666666666667, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789829, Length=233, Percent_Identity=25.7510729613734, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082344, Length=229, Percent_Identity=23.1441048034935, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790635, Length=245, Percent_Identity=24.4897959183673, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 28832; Mature: 28701

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVIERREKILQILKAQKKIDIKFLAKMIDVSEVTVRRDIRILEREGKLLRSRGVIILPD
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECC
VSEYELSFMEREKENVDLKRKIAREAINFVKEGMVVGFDASTTALQIAKLVIEKGINITL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEE
VTTSLPIFRLVTYSNRANVILIGGEYDMKNLSFVGPITIRNLDMFCFNLCFIGASTIIPE
EECCCCEEEEEEECCCCCEEEECCCCCCCCCEEECCEEEEHHHHHHHHHHHHHHHHCCCC
RGFFTPDSRGAEVIRHFALNSSKVIGVTDSSKFKKSAQYLSVDIKQIDVVITDDKFNGEY
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHEEEEEEEEEEEEECCCCCCHH
LKRFPSSVKVIMAK
HHHCCCCEEEEEEC
>Mature Secondary Structure 
TVIERREKILQILKAQKKIDIKFLAKMIDVSEVTVRRDIRILEREGKLLRSRGVIILPD
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCEEEECC
VSEYELSFMEREKENVDLKRKIAREAINFVKEGMVVGFDASTTALQIAKLVIEKGINITL
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEE
VTTSLPIFRLVTYSNRANVILIGGEYDMKNLSFVGPITIRNLDMFCFNLCFIGASTIIPE
EECCCCEEEEEEECCCCCEEEECCCCCCCCCEEECCEEEEHHHHHHHHHHHHHHHHCCCC
RGFFTPDSRGAEVIRHFALNSSKVIGVTDSSKFKKSAQYLSVDIKQIDVVITDDKFNGEY
CCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHEEEEEEEEEEEEECCCCCCHH
LKRFPSSVKVIMAK
HHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]