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The map label for this gene is yedQ [C]

Identifier: 239617058

GI number: 239617058

Start: 700698

End: 702521

Strand: Direct

Name: yedQ [C]

Synonym: Kole_0660

Alternate gene names: 239617058

Gene position: 700698-702521 (Clockwise)

Preceding gene: 239617056

Following gene: 239617093

Centisome position: 30.44

GC content: 39.47

Gene sequence:

>1824_bases
ATGAACAAGCTTCCGATGGAGCACCGATATTTCGAGAAACTCTTTGAAAGCAGCCCTGAAGGGATTGTAATTTGCGATGA
GAAAAATCGTATCCTTCGAGCGAACCCAAAATTCTGCGAAATGTTCGGTTACCAATACGATGAAGTTATTGGACATTTCG
TGGATGACATAGTCGCTAAAGACCCGGAATTAAAAGCCGAGGCAATGCAAATAACAAAAATCACTCTCTCTGGAAAAAAC
ATAAGCAATGAAACCATAAGACAAAGAAAAGACGGAACACGTTTACCTGTATCAATTCTTAGTGCACCTATCTATGATGG
AAAAAAAGTTGTCGGGGTAGTTGGTATTTACAGAGATATAACAGAACTAAAAGAATCCCAGAAAAAACTACTCGAAAGTC
TGAGAAAAAACCAGGCTCTCTTAAACGCCATCCCTGATATGATCTTTGTTATCTCAAGAGACGGTACCTATCTGAATTTT
AAGGCAGACAGAAAAGATTTACTGGCAATACCACCGGAAAAAATCATTGGCAACAACATAAAAAATACTGGTTTTGATCA
TAAAACCCTGAATCAGTTATTTGAGGGAATTGAAAAAGCACTCGATACCAATGAGGTACAGACTGTTGAGTATTCATCGA
AAACGTTTACCGGTCTAGGTTATTTTGAAGCCAGAATAGTAGCATTGAACGAAAAAGAAGTTTTGATGCTGGTAAGAGAT
ATCACTGAACAAAAAAAGAACCAGCTCAGGCTGGAGCGTTTTGCCATATTTCACCGCGCCCTCACAGAAATGTTCAACGA
GATACTCCAAATGGAATTAGACGAAAATCCCTATCAAAGATTGGTGGAACACGCGGTTGAGGTAGTCCCAGGTGCTGAAG
CAGGAAGCCTTCTGATGAAAGATGAAACAGGGGTCTTTCGGCTTGTTGCTGCTGTTGGATACAACCTTGAGAAATTGAAA
AAAATCTTCTTCAAACCGGAAGAACTGGCGCAGGGAAATACAGATAATGTGTTGATTGTTACTGACCTCGTTAGCATAGA
CAAAAATCTCGACGCTGAAAGATTGGAAATCCTGAAAAAATACGGGCGCATTGATGAAATCAAAACCATGCTTTCCATTC
CGGTCAAAATAAATGGTGAACCCGTAGCTTATTTCTGCCTCGACAGTTTTAGTAGCTCGAACGCTTTCGATGAAGATTCC
ATAGAAATGGCAAAGATATTAAGCCAGCAGGTTGCCGTTATTTTGAAGAGAATAAAACTAGAGGAGGAACTTAGAAGACA
AAAGAAACAATTGAAATTCATGTCCGAACACGATCCACTGACTGATCTGCCAAACCGACGCTTATTCGCCGAAAGAGCCA
AACAGTACATTGCTCTTGCGAAACGGAGAAAATCACCTTTGAGTATTCTATATCTTGATTTGAATCACTTCAAAGAAGTA
AACGATTCATTCGGACATGATGTTGGCGATTTGGTTCTCAAAAAAATTACCAAAAGATTCAAATCCTGTTTGAGAGAGGG
TGATCTTGTCGCCCGCCTTGGTGGAGACGAGTTTGTATTCGCATTGCCGGACACAGATGCTGAAAATGCGGCAAAGGTAG
CTAAACGCATAATTGAAGTTATAGAAAAACCAATAAACATCAAAGGCAAAAGTGTGAAAATCAGTGGAAGTATAGGTGTT
GCCGTATTTCCAGATGATGGTGAAAATATTGACCAACTCCTGAAACATGCCGATATGAATATGTACCGTGATAAAAGATT
AAAATGCAATAACGGAGAAGAAAGGAACATAAGAATTCTGGAGAATTCAAATGACAGGAATTGA

Upstream 100 bases:

>100_bases
TTCGATCAAAAACAATAGAAGGAGGAGTATTTCGATCTGACACAACTTTGCTATCTCAACTCATCGTTTCACTCTAAAAC
AAAAGCGGGGGGAAATTTTA

Downstream 100 bases:

>100_bases
ATCTGTGTTCTTGGTGGTACCTTAAATAATTCCATCATCAAATACTTGTTTTTTATCTATTCCGAGTATTTCGAGATTAA
CATCATTCTCAGTCCGAAGC

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MNKLPMEHRYFEKLFESSPEGIVICDEKNRILRANPKFCEMFGYQYDEVIGHFVDDIVAKDPELKAEAMQITKITLSGKN
ISNETIRQRKDGTRLPVSILSAPIYDGKKVVGVVGIYRDITELKESQKKLLESLRKNQALLNAIPDMIFVISRDGTYLNF
KADRKDLLAIPPEKIIGNNIKNTGFDHKTLNQLFEGIEKALDTNEVQTVEYSSKTFTGLGYFEARIVALNEKEVLMLVRD
ITEQKKNQLRLERFAIFHRALTEMFNEILQMELDENPYQRLVEHAVEVVPGAEAGSLLMKDETGVFRLVAAVGYNLEKLK
KIFFKPEELAQGNTDNVLIVTDLVSIDKNLDAERLEILKKYGRIDEIKTMLSIPVKINGEPVAYFCLDSFSSSNAFDEDS
IEMAKILSQQVAVILKRIKLEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEV
NDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEVIEKPINIKGKSVKISGSIGV
AVFPDDGENIDQLLKHADMNMYRDKRLKCNNGEERNIRILENSNDRN

Sequences:

>Translated_607_residues
MNKLPMEHRYFEKLFESSPEGIVICDEKNRILRANPKFCEMFGYQYDEVIGHFVDDIVAKDPELKAEAMQITKITLSGKN
ISNETIRQRKDGTRLPVSILSAPIYDGKKVVGVVGIYRDITELKESQKKLLESLRKNQALLNAIPDMIFVISRDGTYLNF
KADRKDLLAIPPEKIIGNNIKNTGFDHKTLNQLFEGIEKALDTNEVQTVEYSSKTFTGLGYFEARIVALNEKEVLMLVRD
ITEQKKNQLRLERFAIFHRALTEMFNEILQMELDENPYQRLVEHAVEVVPGAEAGSLLMKDETGVFRLVAAVGYNLEKLK
KIFFKPEELAQGNTDNVLIVTDLVSIDKNLDAERLEILKKYGRIDEIKTMLSIPVKINGEPVAYFCLDSFSSSNAFDEDS
IEMAKILSQQVAVILKRIKLEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEV
NDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEVIEKPINIKGKSVKISGSIGV
AVFPDDGENIDQLLKHADMNMYRDKRLKCNNGEERNIRILENSNDRN
>Mature_607_residues
MNKLPMEHRYFEKLFESSPEGIVICDEKNRILRANPKFCEMFGYQYDEVIGHFVDDIVAKDPELKAEAMQITKITLSGKN
ISNETIRQRKDGTRLPVSILSAPIYDGKKVVGVVGIYRDITELKESQKKLLESLRKNQALLNAIPDMIFVISRDGTYLNF
KADRKDLLAIPPEKIIGNNIKNTGFDHKTLNQLFEGIEKALDTNEVQTVEYSSKTFTGLGYFEARIVALNEKEVLMLVRD
ITEQKKNQLRLERFAIFHRALTEMFNEILQMELDENPYQRLVEHAVEVVPGAEAGSLLMKDETGVFRLVAAVGYNLEKLK
KIFFKPEELAQGNTDNVLIVTDLVSIDKNLDAERLEILKKYGRIDEIKTMLSIPVKINGEPVAYFCLDSFSSSNAFDEDS
IEMAKILSQQVAVILKRIKLEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEV
NDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEVIEKPINIKGKSVKISGSIGV
AVFPDDGENIDQLLKHADMNMYRDKRLKCNNGEERNIRILENSNDRN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=36.7469879518072, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=32.7586206896552, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787541, Length=183, Percent_Identity=33.3333333333333, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87081977, Length=224, Percent_Identity=29.0178571428571, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=37.8531073446328, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=37.3417721518987, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1787262, Length=221, Percent_Identity=29.8642533936652, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=30.9941520467836, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=32.9479768786127, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=31.6091954022989, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=28.8343558282209, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI87081921, Length=192, Percent_Identity=30.7291666666667, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=27.8145695364238, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=28.125, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 69334; Mature: 69334

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLPMEHRYFEKLFESSPEGIVICDEKNRILRANPKFCEMFGYQYDEVIGHFVDDIVAK
CCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
DPELKAEAMQITKITLSGKNISNETIRQRKDGTRLPVSILSAPIYDGKKVVGVVGIYRDI
CCCCHHHHEEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
TELKESQKKLLESLRKNQALLNAIPDMIFVISRDGTYLNFKADRKDLLAIPPEKIIGNNI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHCCCC
KNTGFDHKTLNQLFEGIEKALDTNEVQTVEYSSKTFTGLGYFEARIVALNEKEVLMLVRD
CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCEEEEEEEEECCHHHHHHHHH
ITEQKKNQLRLERFAIFHRALTEMFNEILQMELDENPYQRLVEHAVEVVPGAEAGSLLMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEE
DETGVFRLVAAVGYNLEKLKKIFFKPEELAQGNTDNVLIVTDLVSIDKNLDAERLEILKK
CCCHHHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCCEEEEEEHHHHCCCCCHHHHHHHHH
YGRIDEIKTMLSIPVKINGEPVAYFCLDSFSSSNAFDEDSIEMAKILSQQVAVILKRIKL
HCCHHHHHHHHHCCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
NDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEV
HHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
IEKPINIKGKSVKISGSIGVAVFPDDGENIDQLLKHADMNMYRDKRLKCNNGEERNIRIL
HHCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEE
ENSNDRN
ECCCCCC
>Mature Secondary Structure
MNKLPMEHRYFEKLFESSPEGIVICDEKNRILRANPKFCEMFGYQYDEVIGHFVDDIVAK
CCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEECCCHHHHHHCCCHHHHHHHHHHHHHCC
DPELKAEAMQITKITLSGKNISNETIRQRKDGTRLPVSILSAPIYDGKKVVGVVGIYRDI
CCCCHHHHEEEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH
TELKESQKKLLESLRKNQALLNAIPDMIFVISRDGTYLNFKADRKDLLAIPPEKIIGNNI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCHHHHCCCC
KNTGFDHKTLNQLFEGIEKALDTNEVQTVEYSSKTFTGLGYFEARIVALNEKEVLMLVRD
CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCEEEEEEEEECCHHHHHHHHH
ITEQKKNQLRLERFAIFHRALTEMFNEILQMELDENPYQRLVEHAVEVVPGAEAGSLLMK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEE
DETGVFRLVAAVGYNLEKLKKIFFKPEELAQGNTDNVLIVTDLVSIDKNLDAERLEILKK
CCCHHHHHHHHHCCCHHHHHHHHCCCHHHHCCCCCCEEEEEEHHHHCCCCCHHHHHHHHH
YGRIDEIKTMLSIPVKINGEPVAYFCLDSFSSSNAFDEDSIEMAKILSQQVAVILKRIKL
HCCHHHHHHHHHCCEEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
EEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEV
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
NDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEV
HHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCHHHHHHHHHHHHH
IEKPINIKGKSVKISGSIGVAVFPDDGENIDQLLKHADMNMYRDKRLKCNNGEERNIRIL
HHCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHCCCCHHHCCCCCCCCCCCCCEEEE
ENSNDRN
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]