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The map label for this gene is ctpA [H]

Identifier: 239616794

GI number: 239616794

Start: 405341

End: 406564

Strand: Direct

Name: ctpA [H]

Synonym: Kole_0387

Alternate gene names: 239616794

Gene position: 405341-406564 (Clockwise)

Preceding gene: 239616793

Following gene: 239616795

Centisome position: 17.61

GC content: 42.73

Gene sequence:

>1224_bases
ATGAAGAGAATCGTTAAAAGTGTACTTATTGTCGGGATTATTGCTGTTGTTTTTGTTCTCAGCGCATTTAAAGCGTTGAC
ATACGACGAGATGCTCAACAAATTTCAGCCGGTATTCGAAATCATCTCTTACGTGCAGCATAGTTACTATGACATAGAAA
AGGTTGATTACGATAAGGTTCTTGACGAAACACTCAAAGGGGTAATGAAAGGACTGGATGATCCTTTCGCGTGGTATTTT
ACACCGGTACAAAAAACCGAGAACAAGATAGATACAGAGTCCAAATATGGTGGTATAGGTGCCGTTGTCCAATACAATAC
AAAATACGACGCTCTTGAAGTTGTAGCACCTATGGTTGGGAGCCCTGCCGAAAGGGTTGGTTTAAAGGTGGGAGACATAA
TCTTTGAAGTAGATGGCCATAAAGTATCTGAGACAGGATATTACGAATCAGTAAATCTTCTTCGTGGAAAACCAGGAACA
GATGTCACAGTTAAGGTCTATAGAAAAGGCGAAGATGAACCCCTTGTGTTCACGATAACCCGAGCAGAAATCGAAATTAA
AACGGTTAAATATTCAGCGATAGACTACAACAACCATAGAATCGGTTACGTAAGAATAACGCATTTCAGCGAACCCACTT
ACAATGAGTTTCAGAAAGCGATGTTCTCTCTTCTGGAAGCAGATGGACTCATTATCGATCTCAGAAACAACCCGGGTGGT
TTGCTTGGAAGCGTTTTGAACATCTCGAGTCTTCTTATCCCGGAAGGTTTGCCTGTCATAACAATCCGTGATAGAAACGG
AGAAGAAAGAATTTACAGATCCTGGGGAAGCAATTTTAGTGATTTTATAAAGGGTAAGCCTATAGTGGTCCTGGTTAATG
GGGGAAGCGCTTCTGCCTCCGAAATACTGACAGGAGCTCTGAAGGATCACAAAATAGCCACCGTTGTTGGTACAAAAACC
TTTGGAAAGGCGGCGGTTCAAACCGTTTATGACCTTTCAAATGGCGGCGAAATATGGCTCCCAACAGCACATTACTTCAC
CCCCTCGGGTTCCGATATACATTTGAAGGGAATAGAACCTGACATAACTGTGGAGGCTTCTGAAACAAGCACAAATGACG
GCAGGGAACTAACGGTATCAAAGGTTCAACTTGACCCTGAAACCGATGTACAGCTGAAAACCGCCCTCGAAATCATTGCA
GACAAACTTGGTGGTGCCGAATAA

Upstream 100 bases:

>100_bases
ATGAAGCTCAATCCGGAGCGTTTTAGACCCGAAGACAGGATGGTAGGCCACACCACATACATGGTTTTTGGAATCAAGGT
AAATGAGGGAGGAGTCAGGT

Downstream 100 bases:

>100_bases
TTTTCTATGCGTCCCCTAGCTTATGTTTTGTTGATAGGAATTTTTGCAATAACCTTTGGTTCGGTTATTGTAATCACAAG
TTCAAAGGCTTTAACGATAA

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRIVKSVLIVGIIAVVFVLSAFKALTYDEMLNKFQPVFEIISYVQHSYYDIEKVDYDKVLDETLKGVMKGLDDPFAWYF
TPVQKTENKIDTESKYGGIGAVVQYNTKYDALEVVAPMVGSPAERVGLKVGDIIFEVDGHKVSETGYYESVNLLRGKPGT
DVTVKVYRKGEDEPLVFTITRAEIEIKTVKYSAIDYNNHRIGYVRITHFSEPTYNEFQKAMFSLLEADGLIIDLRNNPGG
LLGSVLNISSLLIPEGLPVITIRDRNGEERIYRSWGSNFSDFIKGKPIVVLVNGGSASASEILTGALKDHKIATVVGTKT
FGKAAVQTVYDLSNGGEIWLPTAHYFTPSGSDIHLKGIEPDITVEASETSTNDGRELTVSKVQLDPETDVQLKTALEIIA
DKLGGAE

Sequences:

>Translated_407_residues
MKRIVKSVLIVGIIAVVFVLSAFKALTYDEMLNKFQPVFEIISYVQHSYYDIEKVDYDKVLDETLKGVMKGLDDPFAWYF
TPVQKTENKIDTESKYGGIGAVVQYNTKYDALEVVAPMVGSPAERVGLKVGDIIFEVDGHKVSETGYYESVNLLRGKPGT
DVTVKVYRKGEDEPLVFTITRAEIEIKTVKYSAIDYNNHRIGYVRITHFSEPTYNEFQKAMFSLLEADGLIIDLRNNPGG
LLGSVLNISSLLIPEGLPVITIRDRNGEERIYRSWGSNFSDFIKGKPIVVLVNGGSASASEILTGALKDHKIATVVGTKT
FGKAAVQTVYDLSNGGEIWLPTAHYFTPSGSDIHLKGIEPDITVEASETSTNDGRELTVSKVQLDPETDVQLKTALEIIA
DKLGGAE
>Mature_407_residues
MKRIVKSVLIVGIIAVVFVLSAFKALTYDEMLNKFQPVFEIISYVQHSYYDIEKVDYDKVLDETLKGVMKGLDDPFAWYF
TPVQKTENKIDTESKYGGIGAVVQYNTKYDALEVVAPMVGSPAERVGLKVGDIIFEVDGHKVSETGYYESVNLLRGKPGT
DVTVKVYRKGEDEPLVFTITRAEIEIKTVKYSAIDYNNHRIGYVRITHFSEPTYNEFQKAMFSLLEADGLIIDLRNNPGG
LLGSVLNISSLLIPEGLPVITIRDRNGEERIYRSWGSNFSDFIKGKPIVVLVNGGSASASEILTGALKDHKIATVVGTKT
FGKAAVQTVYDLSNGGEIWLPTAHYFTPSGSDIHLKGIEPDITVEASETSTNDGRELTVSKVQLDPETDVQLKTALEIIA
DKLGGAE

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=330, Percent_Identity=27.8787878787879, Blast_Score=106, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 44906; Mature: 44906

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIVKSVLIVGIIAVVFVLSAFKALTYDEMLNKFQPVFEIISYVQHSYYDIEKVDYDKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LDETLKGVMKGLDDPFAWYFTPVQKTENKIDTESKYGGIGAVVQYNTKYDALEVVAPMVG
HHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
SPAERVGLKVGDIIFEVDGHKVSETGYYESVNLLRGKPGTDVTVKVYRKGEDEPLVFTIT
CCHHHHCCEEEEEEEEECCCEECCCCCHHEEHEECCCCCCCEEEEEEECCCCCCEEEEEE
RAEIEIKTVKYSAIDYNNHRIGYVRITHFSEPTYNEFQKAMFSLLEADGLIIDLRNNPGG
EEEEEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCH
LLGSVLNISSLLIPEGLPVITIRDRNGEERIYRSWGSNFSDFIKGKPIVVLVNGGSASAS
HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCHH
EILTGALKDHKIATVVGTKTFGKAAVQTVYDLSNGGEIWLPTAHYFTPSGSDIHLKGIEP
HHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCEEEEECCCC
DITVEASETSTNDGRELTVSKVQLDPETDVQLKTALEIIADKLGGAE
CEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRIVKSVLIVGIIAVVFVLSAFKALTYDEMLNKFQPVFEIISYVQHSYYDIEKVDYDKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LDETLKGVMKGLDDPFAWYFTPVQKTENKIDTESKYGGIGAVVQYNTKYDALEVVAPMVG
HHHHHHHHHHCCCCCCEEEEEEHHHHCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHC
SPAERVGLKVGDIIFEVDGHKVSETGYYESVNLLRGKPGTDVTVKVYRKGEDEPLVFTIT
CCHHHHCCEEEEEEEEECCCEECCCCCHHEEHEECCCCCCCEEEEEEECCCCCCEEEEEE
RAEIEIKTVKYSAIDYNNHRIGYVRITHFSEPTYNEFQKAMFSLLEADGLIIDLRNNPGG
EEEEEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCH
LLGSVLNISSLLIPEGLPVITIRDRNGEERIYRSWGSNFSDFIKGKPIVVLVNGGSASAS
HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCHHHHHCCCCEEEEEECCCCCHH
EILTGALKDHKIATVVGTKTFGKAAVQTVYDLSNGGEIWLPTAHYFTPSGSDIHLKGIEP
HHHHHHHCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEEEEECEEECCCCCEEEEECCCC
DITVEASETSTNDGRELTVSKVQLDPETDVQLKTALEIIADKLGGAE
CEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]