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The map label for this gene is atpD [H]

Identifier: 239616625

GI number: 239616625

Start: 246992

End: 248443

Strand: Reverse

Name: atpD [H]

Synonym: Kole_0218

Alternate gene names: 239616625

Gene position: 248443-246992 (Counterclockwise)

Preceding gene: 239616626

Following gene: 239616624

Centisome position: 10.79

GC content: 48.69

Gene sequence:

>1452_bases
GTGGCCAAAAAAACCGAAGAAAAGAAGAACAAAAAGGAACAAAAAAGTATCAACAAAGGAAAAATAGTTGCTATTATAGG
GCCTGTAATTGACGTTAGCTTCGAAGGAGCTGAGCTTCCCGATATTCTCAACGCTCTGGAGGTTTACAATAAATTTCTGG
GCAAAAAGATAATACTTGAGGTAGCTCAGGTTATTGGAGACAACGTGGTTAGAACGATAGCCCTTGACTCCACAGATGGT
CTGGTAAGGGGCCAGGAGGTTATCGATACCGGCAGGCAGATTGCTGTGCCTGTTGGAGATAAAATACTTGGAAGGATGTT
CAACCTTCTTGGAGAGCCGATAGATGAAAGAGGTCCCGTTGAGGCTGAAGAGTTCTGGGATATTCATCGTGAACCACCGG
GAGTTACCGAGCAGAAAACAGACGTTGAGATTCTGGAAACCGGTATAAAGGTTATCGATCTCCTTGCTCCCTTCAACAAG
GGTGGAAAAATCGGATTTTTCGGGGGTGCCGGTGTCGGCAAAACCGTTCTCGTTATGGAGCTTATCAGAAACATAGCAAT
TGAGCATAAGGGTCTCTCTATATTCGCCGGTGTCGGTGAAAGGACCAGGGAAGGAAATGACCTCTGGCTCGAAATGCAGG
AGGCAGGGGTTATAGGAAACACAGCTCTCGTATTCGGACAGATGAACGAGCCACCCGGAGCGAGGTTCAGGGTAGCCCTT
TCTGCCATCACCATGGCGGAATATTTCAGGGACGTCCAGAAAAAGGATGTGCTGGTCTTTATCGACAACATTTTCCGATT
CGTTCAGGCTGGTTCCGAGGTTTCGGCATTGCTGGGAAGAATGCCGTCTGCCGTTGGCTATCAGCCGACACTTGCCACTG
AAATGGGGCAGCTTCAGGAACGAATCACATCAACCAAAAACGGTTCTATAACATCCGTTCAGGCCATCTACGTTCCAGCC
GACGACTTTACAGACCCGGCTCCAGCGACGACATTCAGCCATCTGGACGCTACGGTTAACCTGTCAAGATCCATCGCCGA
GCAGGGACTCTATCCGGCGGTTGACCCCCTTGACTCATCTTCCAAAAACCTCGCACCGGAGATCGTTGGAATGGAACACT
ATGTGGTTGCAAGAAGAGTTCAGGAGGTTCTTCAGAGATATAAAGATTTGCAGGACATCATAGCCATCCTTGGAATGGAA
GAGCTTTCAGAGGAAGACAAGCTCATCGTGAGACGTGCCAGAAGAATTCAGAGGTTCCTGACTCAACCGTTCTTCGTTGC
CGAGCGTTTCAGCAATATACCGGGTAGATATGTTCCAATAAAGGAAACCGTTCGTGGGTTCAAAGAAATCCTCGACGGAA
AACATGACGACCTTCCCGAACAGGCCTTCATGATGGTGGGAACCATCGACGAGGCTGTAGAAAAAGCCAGGAAACTCGGC
TACGGAGGCTGA

Upstream 100 bases:

>100_bases
GCTGGAGAGAAACAAAGTAAGACAGGCAACCATCACGCAGGAGATTATCGAAATTGTGAACAGCGCCGAGGCCTTAAAAG
GGTAATCTGGAGGTGTGAAT

Downstream 100 bases:

>100_bases
GGCGCATGTCCCTGAATGTTTCGATTGTGACGCCCTATGCCAAAGTATGGGAAGGCGAAGCTGAATATCTTTCTTTCAGG
ACACCTTTTGGAGAGATGGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MAKKTEEKKNKKEQKSINKGKIVAIIGPVIDVSFEGAELPDILNALEVYNKFLGKKIILEVAQVIGDNVVRTIALDSTDG
LVRGQEVIDTGRQIAVPVGDKILGRMFNLLGEPIDERGPVEAEEFWDIHREPPGVTEQKTDVEILETGIKVIDLLAPFNK
GGKIGFFGGAGVGKTVLVMELIRNIAIEHKGLSIFAGVGERTREGNDLWLEMQEAGVIGNTALVFGQMNEPPGARFRVAL
SAITMAEYFRDVQKKDVLVFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKNGSITSVQAIYVPA
DDFTDPAPATTFSHLDATVNLSRSIAEQGLYPAVDPLDSSSKNLAPEIVGMEHYVVARRVQEVLQRYKDLQDIIAILGME
ELSEEDKLIVRRARRIQRFLTQPFFVAERFSNIPGRYVPIKETVRGFKEILDGKHDDLPEQAFMMVGTIDEAVEKARKLG
YGG

Sequences:

>Translated_483_residues
MAKKTEEKKNKKEQKSINKGKIVAIIGPVIDVSFEGAELPDILNALEVYNKFLGKKIILEVAQVIGDNVVRTIALDSTDG
LVRGQEVIDTGRQIAVPVGDKILGRMFNLLGEPIDERGPVEAEEFWDIHREPPGVTEQKTDVEILETGIKVIDLLAPFNK
GGKIGFFGGAGVGKTVLVMELIRNIAIEHKGLSIFAGVGERTREGNDLWLEMQEAGVIGNTALVFGQMNEPPGARFRVAL
SAITMAEYFRDVQKKDVLVFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKNGSITSVQAIYVPA
DDFTDPAPATTFSHLDATVNLSRSIAEQGLYPAVDPLDSSSKNLAPEIVGMEHYVVARRVQEVLQRYKDLQDIIAILGME
ELSEEDKLIVRRARRIQRFLTQPFFVAERFSNIPGRYVPIKETVRGFKEILDGKHDDLPEQAFMMVGTIDEAVEKARKLG
YGG
>Mature_482_residues
AKKTEEKKNKKEQKSINKGKIVAIIGPVIDVSFEGAELPDILNALEVYNKFLGKKIILEVAQVIGDNVVRTIALDSTDGL
VRGQEVIDTGRQIAVPVGDKILGRMFNLLGEPIDERGPVEAEEFWDIHREPPGVTEQKTDVEILETGIKVIDLLAPFNKG
GKIGFFGGAGVGKTVLVMELIRNIAIEHKGLSIFAGVGERTREGNDLWLEMQEAGVIGNTALVFGQMNEPPGARFRVALS
AITMAEYFRDVQKKDVLVFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKNGSITSVQAIYVPAD
DFTDPAPATTFSHLDATVNLSRSIAEQGLYPAVDPLDSSSKNLAPEIVGMEHYVVARRVQEVLQRYKDLQDIIAILGMEE
LSEEDKLIVRRARRIQRFLTQPFFVAERFSNIPGRYVPIKETVRGFKEILDGKHDDLPEQAFMMVGTIDEAVEKARKLGY
GG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=466, Percent_Identity=67.8111587982833, Blast_Score=632, Evalue=0.0,
Organism=Homo sapiens, GI19913426, Length=351, Percent_Identity=27.3504273504274, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI19913428, Length=352, Percent_Identity=28.4090909090909, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI19913424, Length=343, Percent_Identity=28.5714285714286, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI50345984, Length=415, Percent_Identity=25.0602409638554, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI4757810, Length=415, Percent_Identity=25.0602409638554, Blast_Score=98, Evalue=2e-20,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=65.8695652173913, Blast_Score=616, Evalue=1e-178,
Organism=Escherichia coli, GI1788251, Length=391, Percent_Identity=27.1099744245524, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790172, Length=298, Percent_Identity=28.1879194630872, Blast_Score=120, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=478, Percent_Identity=64.4351464435146, Blast_Score=612, Evalue=1e-175,
Organism=Caenorhabditis elegans, GI17570191, Length=349, Percent_Identity=28.3667621776504, Blast_Score=134, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17565854, Length=355, Percent_Identity=29.5774647887324, Blast_Score=128, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17510931, Length=355, Percent_Identity=26.7605633802817, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI71988080, Length=387, Percent_Identity=25.5813953488372, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=387, Percent_Identity=25.5813953488372, Blast_Score=105, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=344, Percent_Identity=24.4186046511628, Blast_Score=86, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6322581, Length=465, Percent_Identity=66.4516129032258, Blast_Score=627, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=382, Percent_Identity=27.2251308900524, Blast_Score=129, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6319370, Length=366, Percent_Identity=25.4098360655738, Blast_Score=102, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=251, Percent_Identity=27.8884462151394, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24638766, Length=467, Percent_Identity=67.0235546038544, Blast_Score=624, Evalue=1e-179,
Organism=Drosophila melanogaster, GI28574560, Length=486, Percent_Identity=63.5802469135803, Blast_Score=604, Evalue=1e-173,
Organism=Drosophila melanogaster, GI281361666, Length=352, Percent_Identity=27.8409090909091, Blast_Score=131, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24646341, Length=352, Percent_Identity=27.8409090909091, Blast_Score=131, Evalue=9e-31,
Organism=Drosophila melanogaster, GI17136796, Length=352, Percent_Identity=27.8409090909091, Blast_Score=131, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24583988, Length=355, Percent_Identity=28.4507042253521, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583986, Length=355, Percent_Identity=28.4507042253521, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583984, Length=355, Percent_Identity=28.4507042253521, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI24583992, Length=354, Percent_Identity=27.9661016949153, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI20129479, Length=349, Percent_Identity=27.7936962750716, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24658560, Length=376, Percent_Identity=25.2659574468085, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24638768, Length=94, Percent_Identity=57.4468085106383, Blast_Score=102, Evalue=5e-22,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 53281; Mature: 53150

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKTEEKKNKKEQKSINKGKIVAIIGPVIDVSFEGAELPDILNALEVYNKFLGKKIILE
CCCCCHHHHHHHHHHCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAQVIGDNVVRTIALDSTDGLVRGQEVIDTGRQIAVPVGDKILGRMFNLLGEPIDERGPV
HHHHHCCHHEEEEEECCCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCCC
EAEEFWDIHREPPGVTEQKTDVEILETGIKVIDLLAPFNKGGKIGFFGGAGVGKTVLVME
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
LIRNIAIEHKGLSIFAGVGERTREGNDLWLEMQEAGVIGNTALVFGQMNEPPGARFRVAL
HHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCHHHHHH
SAITMAEYFRDVQKKDVLVFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGQLQE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
RITSTKNGSITSVQAIYVPADDFTDPAPATTFSHLDATVNLSRSIAEQGLYPAVDPLDSS
HHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SKNLAPEIVGMEHYVVARRVQEVLQRYKDLQDIIAILGMEELSEEDKLIVRRARRIQRFL
CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHH
TQPFFVAERFSNIPGRYVPIKETVRGFKEILDGKHDDLPEQAFMMVGTIDEAVEKARKLG
HCHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
YGG
CCC
>Mature Secondary Structure 
AKKTEEKKNKKEQKSINKGKIVAIIGPVIDVSFEGAELPDILNALEVYNKFLGKKIILE
CCCCHHHHHHHHHHCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHH
VAQVIGDNVVRTIALDSTDGLVRGQEVIDTGRQIAVPVGDKILGRMFNLLGEPIDERGPV
HHHHHCCHHEEEEEECCCCCCCCCHHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCCC
EAEEFWDIHREPPGVTEQKTDVEILETGIKVIDLLAPFNKGGKIGFFGGAGVGKTVLVME
CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
LIRNIAIEHKGLSIFAGVGERTREGNDLWLEMQEAGVIGNTALVFGQMNEPPGARFRVAL
HHHHHHHHCCCCEEEECCCCCCCCCCCEEEEEHHCCCCCCCEEEEECCCCCCCCHHHHHH
SAITMAEYFRDVQKKDVLVFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGQLQE
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
RITSTKNGSITSVQAIYVPADDFTDPAPATTFSHLDATVNLSRSIAEQGLYPAVDPLDSS
HHHCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SKNLAPEIVGMEHYVVARRVQEVLQRYKDLQDIIAILGMEELSEEDKLIVRRARRIQRFL
CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHH
TQPFFVAERFSNIPGRYVPIKETVRGFKEILDGKHDDLPEQAFMMVGTIDEAVEKARKLG
HCHHHHHHHHHCCCCCEECHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
YGG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA