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The map label for this gene is dapF [H]

Identifier: 239616517

GI number: 239616517

Start: 122446

End: 123159

Strand: Reverse

Name: dapF [H]

Synonym: Kole_0107

Alternate gene names: 239616517

Gene position: 123159-122446 (Counterclockwise)

Preceding gene: 239616518

Following gene: 239616516

Centisome position: 5.35

GC content: 44.12

Gene sequence:

>714_bases
ATGACAGGCGCATACTACTCTGCCACGGGAAATACCTTCTTTGTAGTAGATTCAAGAAACACAAAATTGACTGACTCGAT
CAAAGAGGCAGTGGTATTGAAATATGTTGCCGACAAAGATGGCGTTATCTTTGTGGAAGACCATTTCATGGATTACTTCA
ACAGGGACGGCAAACGTGCTGAATTCTGTGGCAATGGTGCCCGAACCTATGTTGCTTTTATCCATGAGATAACAGGAGAA
ACTAAGATAACCTTTGAATCCTACGCCGGTAGAATTGAAGGTTTTGTTGACGGATTGTATAACGTCAAAATGCCTCCTGT
TAACTATCATGGAAGCCGTGAATTCCAGGGGATAAAGGGCGAATTCCTTACTGTGGGAGTCCCACATTTTGTAATTGAAG
GCGACACAGAAAAGCTGGAATGGGAGACTTTGATTCCCATTAGATGGGAACTCAACACCAATATAAACGTGTACAAAGAG
ATTGAGCCAGGAAAACTCAGAATAAGGACCTTTGAGCGTGGGGTCGAGGGTGAGACCGGAGCATGTGGTACCGGTGCCAC
AGCAACTGCCTGGTGTTACGCAAGGGGAAGAAAACTATTACAGGTTACTTTGCAGGCCAATGGTGGGGAACTTGTTGTAA
GTTTCAAAGAAGGCAACATATATTTAGGAGGAGGTGTTGAAAGATGTTCAGAGGTGCTGCAAGTGCAGTTATAA

Upstream 100 bases:

>100_bases
ACAATACACACTTCTTGATCTGGAACGTGGCAGATAATATCAGGGTTGGGGCTGCTACCAATGCAGTGAGGATACTGCAG
AAGCACAGGGAGCTGAACTC

Downstream 100 bases:

>100_bases
CACCATTTAAAGGAAATGAAATTGATTATGATAGCTTCGATAAGTTTTTAAAGTTTCAGCTTGATTCAGGTATAAACGGG
CTTATAGTCCTTGGAACCAC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MTGAYYSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADKDGVIFVEDHFMDYFNRDGKRAEFCGNGARTYVAFIHEITGE
TKITFESYAGRIEGFVDGLYNVKMPPVNYHGSREFQGIKGEFLTVGVPHFVIEGDTEKLEWETLIPIRWELNTNINVYKE
IEPGKLRIRTFERGVEGETGACGTGATATAWCYARGRKLLQVTLQANGGELVVSFKEGNIYLGGGVERCSEVLQVQL

Sequences:

>Translated_237_residues
MTGAYYSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADKDGVIFVEDHFMDYFNRDGKRAEFCGNGARTYVAFIHEITGE
TKITFESYAGRIEGFVDGLYNVKMPPVNYHGSREFQGIKGEFLTVGVPHFVIEGDTEKLEWETLIPIRWELNTNINVYKE
IEPGKLRIRTFERGVEGETGACGTGATATAWCYARGRKLLQVTLQANGGELVVSFKEGNIYLGGGVERCSEVLQVQL
>Mature_236_residues
TGAYYSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADKDGVIFVEDHFMDYFNRDGKRAEFCGNGARTYVAFIHEITGET
KITFESYAGRIEGFVDGLYNVKMPPVNYHGSREFQGIKGEFLTVGVPHFVIEGDTEKLEWETLIPIRWELNTNINVYKEI
EPGKLRIRTFERGVEGETGACGTGATATAWCYARGRKLLQVTLQANGGELVVSFKEGNIYLGGGVERCSEVLQVQL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 26456; Mature: 26325

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAYYSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADKDGVIFVEDHFMDYFNRDGKRA
CCCEEEECCCCEEEEEECCCCCCHHHHHHHEEEEEEECCCCEEEEEHHHHHHHCCCCCEE
EFCGNGARTYVAFIHEITGETKITFESYAGRIEGFVDGLYNVKMPPVNYHGSREFQGIKG
ECCCCCCHHEEEEEEHHCCCEEEEEHHHCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCC
EFLTVGVPHFVIEGDTEKLEWETLIPIRWELNTNINVYKEIEPGKLRIRTFERGVEGETG
CEEEEECCEEEEECCCCEEEEEEEEEEEEEECCCEEEEEEECCCEEEEEEEECCCCCCCC
ACGTGATATAWCYARGRKLLQVTLQANGGELVVSFKEGNIYLGGGVERCSEVLQVQL
CCCCCCCHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCEEECCCHHHHHHHHEECC
>Mature Secondary Structure 
TGAYYSATGNTFFVVDSRNTKLTDSIKEAVVLKYVADKDGVIFVEDHFMDYFNRDGKRA
CCEEEECCCCEEEEEECCCCCCHHHHHHHEEEEEEECCCCEEEEEHHHHHHHCCCCCEE
EFCGNGARTYVAFIHEITGETKITFESYAGRIEGFVDGLYNVKMPPVNYHGSREFQGIKG
ECCCCCCHHEEEEEEHHCCCEEEEEHHHCCHHHHHHCCCEECCCCCCCCCCCCCCCCCCC
EFLTVGVPHFVIEGDTEKLEWETLIPIRWELNTNINVYKEIEPGKLRIRTFERGVEGETG
CEEEEECCEEEEECCCCEEEEEEEEEEEEEECCCEEEEEEECCCEEEEEEEECCCCCCCC
ACGTGATATAWCYARGRKLLQVTLQANGGELVVSFKEGNIYLGGGVERCSEVLQVQL
CCCCCCCHHHHHHHCCCEEEEEEEECCCCEEEEEEECCCEEECCCHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA