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The map label for this gene is dapB [H]

Identifier: 239616515

GI number: 239616515

Start: 120960

End: 121595

Strand: Reverse

Name: dapB [H]

Synonym: Kole_0105

Alternate gene names: 239616515

Gene position: 121595-120960 (Counterclockwise)

Preceding gene: 239616516

Following gene: 239616514

Centisome position: 5.28

GC content: 43.4

Gene sequence:

>636_bases
ATGAATTACGGTCTTATAGGACACACTGGACAGATGGGAAAGGCCATTCAGGAGGTAATGACAGACTCAAGGCTAGTCTA
CACCCGTGATGAAAACGGGCGTAACCTTATAAAAAGGCCTGAAGTGATAATAGATTTTTCTAACAGAAGCGCCCTTTCCG
AAACCATCAAAGATTGCAGGGAATTCAAATGTGGTTTGGTTATTGGAACTACCGCTTTGACAGAAGCAGATTTCGAATTG
CTTCACAAGTTAGCCGAAGAGGTACCCGTGGTACAGAGCTATAACTTTTCTCCGGGAATAAACCTATTAAAACTCATACT
CAGACAGTTTTCGCCTTATATGAAAAACTGGGATGTGGAGATAGTAGAAAAACACCACAACAGAAAAAAGGACGCACCTT
CTGGAACAGCAATCATGCTGCAGAAAGAGCTTGGCAGGGAGGCAAAAATACACTCCCTAAGAGAAGGCGGGATTCCTGGC
GACCACTCGATAATCTTTGCCAATGACGGAGAGGTTCTGGAGTTGAGTCACAGGGCGATTTCAAGAAAGGTTTTTGCCAT
CGGGGCAAAGGAAGCAGCAAACTTTGTGTTGAAAAAAGAAAAAGGCTTTTTCAGCTATGAAGAGGTGATACTATGA

Upstream 100 bases:

>100_bases
TGGGATTTGGTTCTGAAACCCTTAGATTACCACTGACTGAGGCCAGTAAGCGAACCAGGGAAGTTGTCAAAAAGGCAATG
CAGGATTGTGGGGTGCTCAG

Downstream 100 bases:

>100_bases
ACGCTGAAACAATAATAAAAATGATAAAGGACTCAAAGAAGAAAACTCCGGCCGTATGTTATGTTAGCGGAAATCTTGAA
GGTCTGGAAACGGGAACACT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MNYGLIGHTGQMGKAIQEVMTDSRLVYTRDENGRNLIKRPEVIIDFSNRSALSETIKDCREFKCGLVIGTTALTEADFEL
LHKLAEEVPVVQSYNFSPGINLLKLILRQFSPYMKNWDVEIVEKHHNRKKDAPSGTAIMLQKELGREAKIHSLREGGIPG
DHSIIFANDGEVLELSHRAISRKVFAIGAKEAANFVLKKEKGFFSYEEVIL

Sequences:

>Translated_211_residues
MNYGLIGHTGQMGKAIQEVMTDSRLVYTRDENGRNLIKRPEVIIDFSNRSALSETIKDCREFKCGLVIGTTALTEADFEL
LHKLAEEVPVVQSYNFSPGINLLKLILRQFSPYMKNWDVEIVEKHHNRKKDAPSGTAIMLQKELGREAKIHSLREGGIPG
DHSIIFANDGEVLELSHRAISRKVFAIGAKEAANFVLKKEKGFFSYEEVIL
>Mature_211_residues
MNYGLIGHTGQMGKAIQEVMTDSRLVYTRDENGRNLIKRPEVIIDFSNRSALSETIKDCREFKCGLVIGTTALTEADFEL
LHKLAEEVPVVQSYNFSPGINLLKLILRQFSPYMKNWDVEIVEKHHNRKKDAPSGTAIMLQKELGREAKIHSLREGGIPG
DHSIIFANDGEVLELSHRAISRKVFAIGAKEAANFVLKKEKGFFSYEEVIL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=196, Percent_Identity=33.6734693877551, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 23788; Mature: 23788

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYGLIGHTGQMGKAIQEVMTDSRLVYTRDENGRNLIKRPEVIIDFSNRSALSETIKDCR
CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
EFKCGLVIGTTALTEADFELLHKLAEEVPVVQSYNFSPGINLLKLILRQFSPYMKNWDVE
HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCHH
IVEKHHNRKKDAPSGTAIMLQKELGREAKIHSLREGGIPGDHSIIFANDGEVLELSHRAI
HHHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHHHH
SRKVFAIGAKEAANFVLKKEKGFFSYEEVIL
HHHHHEECHHHHHHHHHHCCCCCCCHHHHCC
>Mature Secondary Structure
MNYGLIGHTGQMGKAIQEVMTDSRLVYTRDENGRNLIKRPEVIIDFSNRSALSETIKDCR
CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
EFKCGLVIGTTALTEADFELLHKLAEEVPVVQSYNFSPGINLLKLILRQFSPYMKNWDVE
HCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCHHHHCCCHH
IVEKHHNRKKDAPSGTAIMLQKELGREAKIHSLREGGIPGDHSIIFANDGEVLELSHRAI
HHHHHCCCCCCCCCCCEEEEEHHHCCHHHHHHHHHCCCCCCCEEEEECCCCEEEHHHHHH
SRKVFAIGAKEAANFVLKKEKGFFSYEEVIL
HHHHHEECHHHHHHHHHHCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA