Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 238925976

GI number: 238925976

Start: 3390403

End: 3390924

Strand: Reverse

Name: ymdB [C]

Synonym: EUBREC_3634

Alternate gene names: 238925976

Gene position: 3390924-3390403 (Counterclockwise)

Preceding gene: 238925979

Following gene: 238925975

Centisome position: 98.3

GC content: 42.34

Gene sequence:

>522_bases
ATGTTGTATAACAATTACCGGAATTCCTTTTGGAAAGCAGTTTTTCAAAATCGCAAAATTGTCTCTGATGCCATTTGGGG
CGGAGGTGGTGTAGATGGTGCGATTCACAGAGCAGCGGGACCGGAACTTCTGACAGAGTGCAGGACACTTCACGGATGTG
AGACTGGAGGAGCAAAGATAACAAAAGCCTATAATCTGCCATGTGATTATGTGATACATACTGTGGGACCGATATGGAAT
GGTGGAAGTAATAGAGAAGAGGAGCTTCTTTCTAACTGCTATTTTAATTCTATGAAGCTGGCTAGGGATAATGGAATCAG
GTCTATTGCATTTCCTTCCATATCAACGGGAGCATATAGTTTTCCGGTGGTACTTGCGGCAAAGATTGCGGTACGTACAG
TTGCTAGATTTCTGCATGAGAATCCGGACAGCTTCGATTTGGTGGAATGGGTGCTATTTGATTCTCATACAGAATCGGTG
TATAAAGCAGAAGTTACGCTCTATTATAATATACGAATTTAG

Upstream 100 bases:

>100_bases
ATAACAAAATTATACACAAATTTTGTTATGGAGTCAATGGATATACTATTAGTGTTAGCAGGATAAACACAACTATTGGA
AATGCTGTGGCAGGTCTGAT

Downstream 100 bases:

>100_bases
TTTATTTGAATCAAAGCAAAAAGCTCAAAAAGGAGAGATTATTCATGGTTTTATTGGTTGTAGATGCACAGAATGGTATC
GTGGATGAACGCTTATATGA

Product: Appr-1-p processing enzyme family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MLYNNYRNSFWKAVFQNRKIVSDAIWGGGGVDGAIHRAAGPELLTECRTLHGCETGGAKITKAYNLPCDYVIHTVGPIWN
GGSNREEELLSNCYFNSMKLARDNGIRSIAFPSISTGAYSFPVVLAAKIAVRTVARFLHENPDSFDLVEWVLFDSHTESV
YKAEVTLYYNIRI

Sequences:

>Translated_173_residues
MLYNNYRNSFWKAVFQNRKIVSDAIWGGGGVDGAIHRAAGPELLTECRTLHGCETGGAKITKAYNLPCDYVIHTVGPIWN
GGSNREEELLSNCYFNSMKLARDNGIRSIAFPSISTGAYSFPVVLAAKIAVRTVARFLHENPDSFDLVEWVLFDSHTESV
YKAEVTLYYNIRI
>Mature_173_residues
MLYNNYRNSFWKAVFQNRKIVSDAIWGGGGVDGAIHRAAGPELLTECRTLHGCETGGAKITKAYNLPCDYVIHTVGPIWN
GGSNREEELLSNCYFNSMKLARDNGIRSIAFPSISTGAYSFPVVLAAKIAVRTVARFLHENPDSFDLVEWVLFDSHTESV
YKAEVTLYYNIRI

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=150, Percent_Identity=50.6666666666667, Blast_Score=148, Evalue=3e-36,
Organism=Homo sapiens, GI13569840, Length=149, Percent_Identity=44.9664429530201, Blast_Score=137, Evalue=7e-33,
Organism=Homo sapiens, GI207450721, Length=149, Percent_Identity=32.8859060402685, Blast_Score=89, Evalue=1e-18,
Organism=Homo sapiens, GI8923143, Length=149, Percent_Identity=32.8859060402685, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI20336746, Length=143, Percent_Identity=34.2657342657343, Blast_Score=83, Evalue=1e-16,
Organism=Homo sapiens, GI93141020, Length=126, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI4758496, Length=126, Percent_Identity=35.7142857142857, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI93141018, Length=126, Percent_Identity=35.7142857142857, Blast_Score=80, Evalue=6e-16,
Organism=Homo sapiens, GI154813199, Length=137, Percent_Identity=35.7664233576642, Blast_Score=71, Evalue=4e-13,
Organism=Escherichia coli, GI1787283, Length=149, Percent_Identity=47.6510067114094, Blast_Score=134, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17538214, Length=132, Percent_Identity=43.9393939393939, Blast_Score=98, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586353, Length=118, Percent_Identity=35.5932203389831, Blast_Score=72, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19343; Mature: 19343

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYNNYRNSFWKAVFQNRKIVSDAIWGGGGVDGAIHRAAGPELLTECRTLHGCETGGAKI
CCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCEE
TKAYNLPCDYVIHTVGPIWNGGSNREEELLSNCYFNSMKLARDNGIRSIAFPSISTGAYS
EEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCH
FPVVLAAKIAVRTVARFLHENPDSFDLVEWVLFDSHTESVYKAEVTLYYNIRI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEC
>Mature Secondary Structure
MLYNNYRNSFWKAVFQNRKIVSDAIWGGGGVDGAIHRAAGPELLTECRTLHGCETGGAKI
CCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCEE
TKAYNLPCDYVIHTVGPIWNGGSNREEELLSNCYFNSMKLARDNGIRSIAFPSISTGAYS
EEEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEEECCCCCCCEEECCCCCCCCCH
FPVVLAAKIAVRTVARFLHENPDSFDLVEWVLFDSHTESVYKAEVTLYYNIRI
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]