Click here to switch to the map view.

The map label for this gene is yeiE [H]

Identifier: 238925972

GI number: 238925972

Start: 3388224

End: 3389126

Strand: Direct

Name: yeiE [H]

Synonym: EUBREC_3630

Alternate gene names: 238925972

Gene position: 3388224-3389126 (Clockwise)

Preceding gene: 238925966

Following gene: 238925977

Centisome position: 98.22

GC content: 42.08

Gene sequence:

>903_bases
ATGATAATATTTCGTACCGTATGCGAAAATGGATATAATTCCACCAAAGCAGCGGAAGTTTTACACATGACACAGCCAGC
AGTCAGCCTTGCCATTAAGGAACTGGAGCAATATTACGGAGTACACCTGTTTGACAGAATCGGCAGACGATTGCAAATCA
CCGATGCAGGTCAGCATTTTCTTCAATATGCGATACATATATCCGACTTGTTTTCAGATATGGAAACAGGGTTGCGTGAT
TGGGATTCTAAAGGAGTTCTCCGTATTGGTGCAAGCATCACCATCGGCTCGCAGTTTTTACCGAACTATGTAAAGGCATT
CTCTGAACTCTGCCCAGAGCTTGATGTCAGAGTTATCGTTGAGCAATCAGAACATCTGGAACAAAAAATTTTGGCAAATG
AATTGGATTGTGCGTTGATCGAAGGTATTGCACATGATCCAAATATCGTTTCGGAAGCCTACATGGAAGATCATTTGAGT
GTTATATGCGGTACGGATAAAGGCTGGACACAGGGGCAAGTTATATCCATAGAAGATTTTCAAAGACAGCGATTTCTCTT
GCGAGAAAAAGGCAGTGGCACACGAGAGGTGTTTAACCGTGTAGTTGAACAGGCTGGCATCCACATTACACCAGTATGGG
AAGCAACGAGCACAACAGCACTGGTCAATGCTGCAATCAATGGATTAGGAATTGCTGTATTACCGCATCGAATGATTCTT
CCGGCTCTGCGACAAGGCTTGATTTGTACTGTCAAAGTAGAGGGGTTGAGTTTCAGCCGAAATTTCCATATAATTCATCA
TAAAGATAAGTTTTTAACAACTTCTGCCAAGCGATTTATTACTTTGTGCAGAGATTTTGAGACTGATTACCCCTTGCCTT
GTTACAACGGACTATATGAATAA

Upstream 100 bases:

>100_bases
ATTAACATTATACCGCTTGATTTCTGATAAGGGAAATAATATAATTTTACAGAAATGATAAGTATTTTTATATAAGGGGA
TTGTTATGACGATACGACAC

Downstream 100 bases:

>100_bases
AAGATTAGAGCCGCAGTCCAATCACATGACTGCGGCTCTTGCAATATTAGTATAAAGATTTATATTCAGTTACAGTTTTC
AGATATGCTTCGGGATTGCC

Product: LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MIIFRTVCENGYNSTKAAEVLHMTQPAVSLAIKELEQYYGVHLFDRIGRRLQITDAGQHFLQYAIHISDLFSDMETGLRD
WDSKGVLRIGASITIGSQFLPNYVKAFSELCPELDVRVIVEQSEHLEQKILANELDCALIEGIAHDPNIVSEAYMEDHLS
VICGTDKGWTQGQVISIEDFQRQRFLLREKGSGTREVFNRVVEQAGIHITPVWEATSTTALVNAAINGLGIAVLPHRMIL
PALRQGLICTVKVEGLSFSRNFHIIHHKDKFLTTSAKRFITLCRDFETDYPLPCYNGLYE

Sequences:

>Translated_300_residues
MIIFRTVCENGYNSTKAAEVLHMTQPAVSLAIKELEQYYGVHLFDRIGRRLQITDAGQHFLQYAIHISDLFSDMETGLRD
WDSKGVLRIGASITIGSQFLPNYVKAFSELCPELDVRVIVEQSEHLEQKILANELDCALIEGIAHDPNIVSEAYMEDHLS
VICGTDKGWTQGQVISIEDFQRQRFLLREKGSGTREVFNRVVEQAGIHITPVWEATSTTALVNAAINGLGIAVLPHRMIL
PALRQGLICTVKVEGLSFSRNFHIIHHKDKFLTTSAKRFITLCRDFETDYPLPCYNGLYE
>Mature_300_residues
MIIFRTVCENGYNSTKAAEVLHMTQPAVSLAIKELEQYYGVHLFDRIGRRLQITDAGQHFLQYAIHISDLFSDMETGLRD
WDSKGVLRIGASITIGSQFLPNYVKAFSELCPELDVRVIVEQSEHLEQKILANELDCALIEGIAHDPNIVSEAYMEDHLS
VICGTDKGWTQGQVISIEDFQRQRFLLREKGSGTREVFNRVVEQAGIHITPVWEATSTTALVNAAINGLGIAVLPHRMIL
PALRQGLICTVKVEGLSFSRNFHIIHHKDKFLTTSAKRFITLCRDFETDYPLPCYNGLYE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=281, Percent_Identity=31.6725978647687, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI157672245, Length=287, Percent_Identity=25.7839721254355, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693105, Length=277, Percent_Identity=24.5487364620939, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=26.3698630136986, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=26.6393442622951, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790399, Length=229, Percent_Identity=24.0174672489083, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=244, Percent_Identity=27.4590163934426, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=24.1258741258741, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082132, Length=285, Percent_Identity=21.4035087719298, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789506, Length=303, Percent_Identity=23.1023102310231, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787530, Length=246, Percent_Identity=22.7642276422764, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789204, Length=237, Percent_Identity=24.0506329113924, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=152, Percent_Identity=26.9736842105263, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=231, Percent_Identity=25.1082251082251, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788626, Length=222, Percent_Identity=26.1261261261261, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081904, Length=150, Percent_Identity=28, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33866; Mature: 33866

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFRTVCENGYNSTKAAEVLHMTQPAVSLAIKELEQYYGVHLFDRIGRRLQITDAGQHF
CEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHH
LQYAIHISDLFSDMETGLRDWDSKGVLRIGASITIGSQFLPNYVKAFSELCPELDVRVIV
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHHHHHHHCCCCCEEEEE
EQSEHLEQKILANELDCALIEGIAHDPNIVSEAYMEDHLSVICGTDKGWTQGQVISIEDF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEEHHHH
QRQRFLLREKGSGTREVFNRVVEQAGIHITPVWEATSTTALVNAAINGLGIAVLPHRMIL
HHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEHHHHHHHH
PALRQGLICTVKVEGLSFSRNFHIIHHKDKFLTTSAKRFITLCRDFETDYPLPCYNGLYE
HHHHCCCEEEEEEECEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIIFRTVCENGYNSTKAAEVLHMTQPAVSLAIKELEQYYGVHLFDRIGRRLQITDAGQHF
CEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCEEEEEHHHHHH
LQYAIHISDLFSDMETGLRDWDSKGVLRIGASITIGSQFLPNYVKAFSELCPELDVRVIV
HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEECHHHHHHHHHHHHHHCCCCCEEEEE
EQSEHLEQKILANELDCALIEGIAHDPNIVSEAYMEDHLSVICGTDKGWTQGQVISIEDF
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCEEEECCCCCCCCCEEEEHHHH
QRQRFLLREKGSGTREVFNRVVEQAGIHITPVWEATSTTALVNAAINGLGIAVLPHRMIL
HHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEHHHHHHHH
PALRQGLICTVKVEGLSFSRNFHIIHHKDKFLTTSAKRFITLCRDFETDYPLPCYNGLYE
HHHHCCCEEEEEEECEEEECCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]