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The map label for this gene is yokA [H]

Identifier: 238925920

GI number: 238925920

Start: 3353118

End: 3354728

Strand: Reverse

Name: yokA [H]

Synonym: EUBREC_3578

Alternate gene names: 238925920

Gene position: 3354728-3353118 (Counterclockwise)

Preceding gene: 238925921

Following gene: 238925919

Centisome position: 97.25

GC content: 51.15

Gene sequence:

>1611_bases
ATGTTAAGACAGACCAACCAACAACCAATTACCGCCCTTTACCCAAGACTTTCCCATGAGGACGAGCTGCAAGGCGAGAG
CAATTCCATTTCCAATCAGAAGCGTATCCTTGAAACCTATGCAAAGCAGAACGGCTTTTCCAATCTGCGCTGGTACACGG
ACGACGGTTATTCTGGTGCGAACTTTCAAAGACCCGGTTTTCAAGCCATGCTTGCGGACATTGAAGCCGGAAAAGTAGGG
ACAGTTATCGTAAAGGATATGTCGAGGTTAGGGAGAAACTACCTGCAAGTGGGAATGTACACGGAAATGATTTTCCCACA
GAAAGGTGTCCGCTTCATCGCTATCAATGACGGAGTGGACAGCGCACAGGGCGACAATGACTTTGCCCCGCTGCGGAATA
TCTTTAACGAATGGCTGGTGAGAGATACGAGCAAGAAAATCAAAGCAGTAAAACGCTCAAAAGGCATGAGTGGCAAGCCC
ATCACAAGCAAGCCTGTGTATGGCTACCTCATGGACGAGGACGAAAATTTCATTATTGACGAGGAAGCTGCACCCGTAGT
CAAGCAGATATACAACCTCTGCCTTGCCGGGAATGGTCCGACCAAGATAGCCCGTATGCTCACAGAGCAGCAAATCCCCA
CGCCGGGGACGCTGGAATACCGCAGGACGGGCAGCACCCGCCGCTACCACCCCGGCTATGAGTGCAAGTGGGCGACCAAT
ACCGTTGTGCATATCCTTGAAAACCGGGAATACACAGGCTGTCTGGTAAACTTCAAGACGGAAAAACTCTCTTACAAAGT
CAAGCACAGTGTAGAAAATCCCCCGGAAAAGCAAGTGATTTTCGAGAATCACCACGAGCCTATCATAGACACCCAAACAT
GGGAACGGGTGCAGGAGCTTCGCAAGCAGCGCAAACGCCCCAACCGCTATGATGAAGTGGGCTTGTTCTCCGGCATACTG
TTCTGTGCAGACTGCGGCAGCGTCATGTATCAGCAGCGATACCAGACGGACAAGCGCAAGCAGGACTGTTATATCTGCGG
CAGCTACAAGAAGCGCACCCATGACTGTACGGCGCACTTTATCCGCACCGACCTCTTGACCGCTGGTGTACTCTCCAATC
TGCGGAAAGTGACCAGCTATGCGGCAAAGCATGAAGCCCGGTTTATGAAGCTCTTGATTGAGCAGAACGAGGACGGGGGC
AAACGCAGGAACGCCGCCAAGAAAAAGGAACTGGAAGCCGCCGAGAAACGCATAGCCGAGTTATCCGCTATCTTCAAGCG
GCTGTATGAGGACAGCGTGACCGGGCGCATATCAGACGAGCGTTTCACAGAACTGTCGGCAGACTATGAAGCAGAACAAC
GGGAACTGAAAGAAAGAGCCGCCGCTATCCAAGCGGAGCTTTCCAAAGCACAGGAAGCCACCGTGAACGCAGAAAAGTTT
ATGAATGTTGTCCGGCGGCATACCAGTTTTGAAGAACTTACCCCTACTCTGTTGCGGGAGTTTGTAGAGAAAATCGTTGT
GCATGAGTGCAGCTATGACGAGAACAAGACCCGCAGACAGGACATTGAGATTTATTATTCTTTTGTTGGCAAGGTGGACT
TGCCCGAATAA

Upstream 100 bases:

>100_bases
GAAGCAGATTTGACGCTTTTGCCGCTATACAGACAGCCGCCCCATGTGGTACAATCAAGGTACGGAATAGTGGGGCTGGC
TGTCGGAAACGGAGGATTTT

Downstream 100 bases:

>100_bases
CCGCCCGACCTATCCGACACAATGCGCAAGTGCCGGATAGGAACGGCAAAATTTTTTACACTTCTATTACTTCTTTATCA
CACATCAGCAAAGAGCCAGG

Product: site-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGANFQRPGFQAMLADIEAGKVG
TVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVDSAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKP
ITSKPVYGYLMDEDENFIIDEEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATN
TVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQELRKQRKRPNRYDEVGLFSGIL
FCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHFIRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGG
KRRNAAKKKELEAAEKRIAELSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKF
MNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE

Sequences:

>Translated_536_residues
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGANFQRPGFQAMLADIEAGKVG
TVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVDSAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKP
ITSKPVYGYLMDEDENFIIDEEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATN
TVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQELRKQRKRPNRYDEVGLFSGIL
FCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHFIRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGG
KRRNAAKKKELEAAEKRIAELSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKF
MNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE
>Mature_536_residues
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGANFQRPGFQAMLADIEAGKVG
TVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVDSAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKP
ITSKPVYGYLMDEDENFIIDEEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATN
TVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQELRKQRKRPNRYDEVGLFSGIL
FCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHFIRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGG
KRRNAAKKKELEAAEKRIAELSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKF
MNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011109
- InterPro:   IPR006119 [H]

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 61860; Mature: 61860

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS01030 RNA_POL_M_15KD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGA
CCCCCCCCCHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
NFQRPGFQAMLADIEAGKVGTVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVD
CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
SAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKPITSKPVYGYLMDEDENFIID
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEC
EEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATN
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCH
TVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQEL
HHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHH
RKQRKRPNRYDEVGLFSGILFCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHF
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH
IRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGGKRRNAAKKKELEAAEKRIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKF
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
MNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGA
CCCCCCCCCHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCC
NFQRPGFQAMLADIEAGKVGTVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVD
CCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
SAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKPITSKPVYGYLMDEDENFIID
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCEEEC
EEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATN
CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEECCH
TVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQEL
HHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHH
RKQRKRPNRYDEVGLFSGILFCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHF
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHH
IRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGGKRRNAAKKKELEAAEKRIAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
LSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKF
HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
MNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]