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The map label for this gene is ymdB [C]

Identifier: 238925788

GI number: 238925788

Start: 3241771

End: 3242076

Strand: Reverse

Name: ymdB [C]

Synonym: EUBREC_3446

Alternate gene names: 238925788

Gene position: 3242076-3241771 (Counterclockwise)

Preceding gene: 238925789

Following gene: 238925787

Centisome position: 93.98

GC content: 39.54

Gene sequence:

>306_bases
ATGCCATTTAAGATTGTCCGCAACGATATTACACGAGTAAAGGCAGATGTGATTGTAAATACTGCTAATCCAAATCCGAT
ATGTGTAAGTGGCACGGATTTAGCAATATATGAGGCAGCAGGAAAAGAAAAGCTTCTCGCAGAAAGAGCGAATATCGGCA
AAATTGCAAGAGGTGATATTGCTGTCACTGGTGCATATAACCTAAAGGCAAAATATATTATTCATACAGTAGGTCCGGTA
TGGACGGATGGATTGCACCATGAATTTGAAATTCTGAAGCATTTTATGGAATCCCTGCTGTGTTGA

Upstream 100 bases:

>100_bases
GCAGATTGTAGATTATATGCATGAGATGTATCCCGAGGCAACGGATAAGCAGATAAGGAAGCTGTTAAAGTAATACAGGC
ATGGATAAGGAGGTGCCGCA

Downstream 100 bases:

>100_bases
TTGCAGAGTGTAAAAGTCGGATTGATAAGGGACTGATGACGGATGTTCTTGATGAATTTGACCATGTACTTGGCAGCAGG
AGCGTTTTTTGAAACAACAG

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 100

Protein sequence:

>101_residues
MPFKIVRNDITRVKADVIVNTANPNPICVSGTDLAIYEAAGKEKLLAERANIGKIARGDIAVTGAYNLKAKYIIHTVGPV
WTDGLHHEFEILKHFMESLLC

Sequences:

>Translated_101_residues
MPFKIVRNDITRVKADVIVNTANPNPICVSGTDLAIYEAAGKEKLLAERANIGKIARGDIAVTGAYNLKAKYIIHTVGPV
WTDGLHHEFEILKHFMESLLC
>Mature_100_residues
PFKIVRNDITRVKADVIVNTANPNPICVSGTDLAIYEAAGKEKLLAERANIGKIARGDIAVTGAYNLKAKYIIHTVGPVW
TDGLHHEFEILKHFMESLLC

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Escherichia coli, GI1787283, Length=99, Percent_Identity=41.4141414141414, Blast_Score=69, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 11131; Mature: 11000

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFKIVRNDITRVKADVIVNTANPNPICVSGTDLAIYEAAGKEKLLAERANIGKIARGDI
CCCCHHHHHHHHEEEEEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCE
AVTGAYNLKAKYIIHTVGPVWTDGLHHEFEILKHFMESLLC
EEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PFKIVRNDITRVKADVIVNTANPNPICVSGTDLAIYEAAGKEKLLAERANIGKIARGDI
CCCHHHHHHHHEEEEEEEECCCCCCEEEECCCEEEEECCCCHHHHHHHCCCCCCCCCCE
AVTGAYNLKAKYIIHTVGPVWTDGLHHEFEILKHFMESLLC
EEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12566566 [H]