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The map label for this gene is ykfC [H]

Identifier: 238925742

GI number: 238925742

Start: 3209613

End: 3211007

Strand: Reverse

Name: ykfC [H]

Synonym: EUBREC_3399

Alternate gene names: 238925742

Gene position: 3211007-3209613 (Counterclockwise)

Preceding gene: 238925743

Following gene: 238925741

Centisome position: 93.08

GC content: 43.51

Gene sequence:

>1395_bases
ATGGCAGAAAACATTGAAAACAATGGCTGTTCGCAAAGAGATAATGCGGAACATGAAGGGTATGTGAAAGCGTCTAGGTC
ATTCAATCGGATATGGAAAGAAAGAGACAGTGCACAGCCGAGACTTTTGGAAACGATACTGTATAAAGACAACTTTAACA
GAGCGTATAAGAGAGTTAAGGCAAACAAGGGAGCGCCGGGAATTGATGGCATGACCATTGAAGAGGCTCTTCCATATCTA
AAGGAACATCAACAAGAGATAACTGACCGCATTTATCGTGGAAAGTATACTCCGTCTCCAGTAAGACGAGTTGAAATTCC
CAAACCAGATGGTGGTGTGCGAAAGCTTGGCATACCAACAGTGATAGACCGTACACTTCAACAGGCAATAACCCAACAGT
TAGTGCCGATCTATGAACCGCTGTTTGCAGATGGTAGCTATGGCTATCGTCCGAACAGAAGTGCAAAAGATGCAATACTT
AAGGTTAAGGAGTATGCAGAACAAGGCTATACATTCGCTGTAGTCCTTGACTTGTCAAAGTACTTCGATACTCTTAATCA
CGAAATTCTCATCAATCTTCTCCGGAAGAATGTAAAAGATGAACGTGTAGTACAGTTGATAAAGCGCTATCTGAAAAGCG
GTGTAATGGAAAACGGAGTGGTCATTGACACAGAGGAAGGCTCACCACAAGGTGGAAATCTATCACCATTGCTGGCAAAC
ATCTACCTCAATGAGTTCGACCAGGAATACCTGAAAAGAGGTGTTCCATGCATAAGATATGCAGATGACATCGTGCTTCT
TGCAAAGAGCAAGCGGGCATCAGAGAGACTCTTGGAAAGCAGTACAAAATATCTTGAGGAGAGGCTGAAACTTACAGTCA
ACCGGGAAAAGAGCCGTACTGTCAGCGTGTTTGCAATCCGAAATTTTAAATTCCTTGGCTTTGCATTGGGAAGGAACGGA
GAGGGCATTTATGTCCGAGTTCATCCGAAGTCATGGAAGAAGTTCAAGTCCAGACTGAAGGAGTTATCTTCCCGTAAGCG
ATGTCAGTCAATCAAGCCAAACCTTGAGAAAATCAAGGTGTATGCGAGGGGATGGCTTAACTACTACGGAATTGCAAGCA
TGAAGAACAACATAGATGAAATCAACGGATGGCTCTATCACAGAATACGTATGTGTATATGGAAACAGTGGAAGAAACCA
AGGACGAAGGTACGTAACCTTATCAAGATGGGAGTACCCAAAGACTTGGCAATGCAAGCGGGTAATACCCGACGGGGACA
TTGGTTCGCAACGCATACAGTTGCAGTAAACATGGCAATGACAAAAGAAAGACTGATAAACAGTGGCTTTTATGATTTAG
CCACAGCCTATCAGTCTGTGCACGTCAACTATTGA

Upstream 100 bases:

>100_bases
CTGAACGCACAGAAGTCAGCAGAGGTCATAGTAGCCGAGAGGTGAAGGACCGAATCAGTAGGAGTCTTGAGTATGACCGA
GAAAGGAGGAATGACCATCT

Downstream 100 bases:

>100_bases
AACCGCCGTGTACCGAACGGTACGCACGGTGGTGTGAGAGGACGGCGGTTAGTCACCGCCTCCTACTCGATTACACCTAC
TATATCGGACGCCATTTTCA

Product: putative reverse transcriptasematurase of intron

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
EGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKVYARGWLNYYGIASMKNNIDEINGWLYHRIRMCIWKQWKKP
RTKVRNLIKMGVPKDLAMQAGNTRRGHWFATHTVAVNMAMTKERLINSGFYDLATAYQSVHVNY

Sequences:

>Translated_464_residues
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYL
KEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAIL
KVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNG
EGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKVYARGWLNYYGIASMKNNIDEINGWLYHRIRMCIWKQWKKP
RTKVRNLIKMGVPKDLAMQAGNTRRGHWFATHTVAVNMAMTKERLINSGFYDLATAYQSVHVNY
>Mature_463_residues
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYLK
EHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILK
VKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANI
YLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNGE
GIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKVYARGWLNYYGIASMKNNIDEINGWLYHRIRMCIWKQWKKPR
TKVRNLIKMGVPKDLAMQAGNTRRGHWFATHTVAVNMAMTKERLINSGFYDLATAYQSVHVNY

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=198, Percent_Identity=35.3535353535354, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=247, Percent_Identity=30.3643724696356, Blast_Score=103, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 53712; Mature: 53580

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
VSVFAIRNFKFLGFALGRNGEGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKV
EEEEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YARGWLNYYGIASMKNNIDEINGWLYHRIRMCIWKQWKKPRTKVRNLIKMGVPKDLAMQA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCC
GNTRRGHWFATHTVAVNMAMTKERLINSGFYDLATAYQSVHVNY
CCCCCCCEEEEHHEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
ANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEECCCHH
VIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEHHH
YFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLAN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHH
IYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRT
HHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
VSVFAIRNFKFLGFALGRNGEGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPNLEKIKV
EEEEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YARGWLNYYGIASMKNNIDEINGWLYHRIRMCIWKQWKKPRTKVRNLIKMGVPKDLAMQA
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCC
GNTRRGHWFATHTVAVNMAMTKERLINSGFYDLATAYQSVHVNY
CCCCCCCEEEEHHEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]