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The map label for this gene is lytT [H]

Identifier: 238925554

GI number: 238925554

Start: 3052473

End: 3053198

Strand: Direct

Name: lytT [H]

Synonym: EUBREC_3210

Alternate gene names: 238925554

Gene position: 3052473-3053198 (Clockwise)

Preceding gene: 238925553

Following gene: 238925555

Centisome position: 88.49

GC content: 32.92

Gene sequence:

>726_bases
ATGAATCTTAATATAGCAATATGCGACGATGATACAAACGATATCGCAATAATGAAAAAGAATATTTTACAATACACAAT
AGAAACTGATAACAACATTGTCGTATCATCTTATTTTTCAGCGAGTGATATACTTTCAGACTACAAGAATCATCTCTATC
AGATAGTACTTCTGGATATAGAAATGCCAGACATAAATGGTATGGAACTTGCCAGACAACTCCGGGATATGGATGATGAT
CTGCTCATTATATTTACAACATCCTATCCGGAATATATGCACGAAAGCTTTGAAGTCCAGCCATTTCAATTCATAACAAA
ACCGGTCGACTATACAGCTATATACAAGCTTTTTAACAATATTATCAAAAAATTATATCGAAACTCAAAAAGTATCGTTA
TAATTGATACTGATGGTGAAAAAAATTTTGTACCTTTAAGCGATCTTCTTTATATTTCATCAATGAAAGAAAATAAGTTA
CATCTCAGATATCAACTTACTGACAGAGCATTGATATCCAAAGGCACTTTATCCGAAGCAGAAAAACGACTTTCTTCTCA
CGGATTTGTTTCACCTTCAAGAGGATTTCTGGTAAATTTACACCAGATCAGATCAATTACTTCCACGCGGCTTTTACTGA
ATAACGGCTTTGAACTTCCAATCAGCCGGAGAAGATCCAAGGAATTACAAAATATCTACTCTCAGCACATTATTAATATA
TTATAA

Upstream 100 bases:

>100_bases
TTGTTACACTGGAATAAAGGTTTAATTTTTATTGATTTAAGTCTCATAATATGCGCAACAGGTCTTTATACCGGATATAT
TTCAAATATAAGGAGGCATC

Downstream 100 bases:

>100_bases
ATTTAAGGAGACAAGTTTATGAAAATAGTATTGTTGAATTTATTGGACAGCATGATGTCCGGTGCAGCAGCCTTTATATT
TTTTCAGACAATTCTTGGAA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNLNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYKNHLYQIVLLDIEMPDINGMELARQLRDMDDD
LLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKLFNNIIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISSMKENKL
HLRYQLTDRALISKGTLSEAEKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIYSQHIINI
L

Sequences:

>Translated_241_residues
MNLNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYKNHLYQIVLLDIEMPDINGMELARQLRDMDDD
LLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKLFNNIIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISSMKENKL
HLRYQLTDRALISKGTLSEAEKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIYSQHIINI
L
>Mature_241_residues
MNLNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYKNHLYQIVLLDIEMPDINGMELARQLRDMDDD
LLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKLFNNIIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISSMKENKL
HLRYQLTDRALISKGTLSEAEKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIYSQHIINI
L

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=218, Percent_Identity=22.9357798165138, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082052, Length=252, Percent_Identity=24.6031746031746, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27981; Mature: 27981

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYKNHLYQIVLLDI
CCCEEEEECCCCCCCCEEECCEEEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEEEEEE
EMPDINGMELARQLRDMDDDLLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKLFNN
ECCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHH
IIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISSMKENKLHLRYQLTDRALISKGTLSEA
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHCCCCHHHH
EKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIYSQHIINI
HHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MNLNIAICDDDTNDIAIMKKNILQYTIETDNNIVVSSYFSASDILSDYKNHLYQIVLLDI
CCCEEEEECCCCCCCCEEECCEEEEEEECCCCEEEEECCCHHHHHHHHHHHEEEEEEEEE
EMPDINGMELARQLRDMDDDLLIIFTTSYPEYMHESFEVQPFQFITKPVDYTAIYKLFNN
ECCCCCHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHH
IIKKLYRNSKSIVIIDTDGEKNFVPLSDLLYISSMKENKLHLRYQLTDRALISKGTLSEA
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHHHHCCCCHHHH
EKRLSSHGFVSPSRGFLVNLHQIRSITSTRLLLNNGFELPISRRRSKELQNIYSQHIINI
HHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]