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The map label for this gene is araQ [H]

Identifier: 238925160

GI number: 238925160

Start: 2690338

End: 2690604

Strand: Reverse

Name: araQ [H]

Synonym: EUBREC_2814

Alternate gene names: 238925160

Gene position: 2690604-2690338 (Counterclockwise)

Preceding gene: 238925162

Following gene: 238925159

Centisome position: 78.0

GC content: 38.95

Gene sequence:

>267_bases
ATGAAACCTGCAATTGCAGTACAGGCAATTTTCACATTTGTAGGTTCATGGAACAACTACTTCACACCGGCCCTGATCAT
CCAGTCAAAGAACAAGATGACAGTACCAATTTTGATTGCCACACTTCGAGGAGCGGACTATATGAATTTCGATATGGGAA
AAATATATATGATGATAACAGTAGCTATCGTGCCTATTATTGTTGTATATCTCCTCTTATCAAAATATATTATTGCCGGT
GTCACACTTGGAGGCGTGAAGGAGTAA

Upstream 100 bases:

>100_bases
GGTTCTCCTTTGTAATAAAATATTAGATTTATGTCATCTTTCTATTATTATGACATGAATCTGATATTTTTACAATTTCA
ACCATATAGTATTGCCGATC

Downstream 100 bases:

>100_bases
ACAATTTAATTAGTTTTAGCATCAGAGCAGATGGCTTACATATATGTTATGTGGGTCATCTGTTTTTTAGTATATTGAAA
TATGAGGTACAGCATATTTT

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MKPAIAVQAIFTFVGSWNNYFTPALIIQSKNKMTVPILIATLRGADYMNFDMGKIYMMITVAIVPIIVVYLLLSKYIIAG
VTLGGVKE

Sequences:

>Translated_88_residues
MKPAIAVQAIFTFVGSWNNYFTPALIIQSKNKMTVPILIATLRGADYMNFDMGKIYMMITVAIVPIIVVYLLLSKYIIAG
VTLGGVKE
>Mature_88_residues
MKPAIAVQAIFTFVGSWNNYFTPALIIQSKNKMTVPILIATLRGADYMNFDMGKIYMMITVAIVPIIVVYLLLSKYIIAG
VTLGGVKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 9716; Mature: 9716

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPAIAVQAIFTFVGSWNNYFTPALIIQSKNKMTVPILIATLRGADYMNFDMGKIYMMIT
CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHEEEEECCCCCCCCCHHHHHHHHH
VAIVPIIVVYLLLSKYIIAGVTLGGVKE
HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKPAIAVQAIFTFVGSWNNYFTPALIIQSKNKMTVPILIATLRGADYMNFDMGKIYMMIT
CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHEEEEECCCCCCCCCHHHHHHHHH
VAIVPIIVVYLLLSKYIIAGVTLGGVKE
HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]