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The map label for this gene is ydiF [H]

Identifier: 238925155

GI number: 238925155

Start: 2686876

End: 2688777

Strand: Reverse

Name: ydiF [H]

Synonym: EUBREC_2809

Alternate gene names: 238925155

Gene position: 2688777-2686876 (Counterclockwise)

Preceding gene: 238925156

Following gene: 238925154

Centisome position: 77.94

GC content: 47.11

Gene sequence:

>1902_bases
ATGTTATACCAGATTAAGGATGGGACAGTTTCGGTAGGTGGTCAGACGATTCTGTCCCATGTTGATTTTTATATAAAGGA
AAAAGAAAAAATAGCTGTTGTCGGCAAAAACGGAGCAGGAAAGACCACATTGCTTCGGCTTCTTGCGGGGGAGCTGCAGC
TTGACCGCGATGACCGTCGCGGTATGTCGTCAGGAGCACATGGCAAAGAGACTGCCTGCAAAAATAGTCTTGGAATCGTA
ACCTCGCGAAATATCACAATCGGAATGCTCCGTCAGGTTGATTCCTCCAATCAGGACAAGACAATCGAGGAAATACTTCT
TGAGAGCTGTCCGGACAGGGATACATATTCCAAAGAGCGGTTTGACTACGAGATGGAGTACGACAGGCTGTTTACAGGCT
TTGGCTTTGAAAAAGAAGAAAAAAGCCGTACACTCGGCAGTTTTTCTGGAGGTGAACAGACCAAGATTTCACTTATAAAG
CTGCTGCTTGAAAAGCCGGATTTGCTGCTTCTTGATGAGCCGACGAATCATCTTGATATGAAAACTGTCGAGTGGCTGGA
GGATTATCTGATAAACTATCCAAAGGCTGTTGTCATTGTGTCCCATGACAGGGCGTTTCTTGATGCAGTTGCGACTGGTG
TTTATGAGCTTGAAAATGGCAGTCTGCACAGATATGCCGGCAACTACACTCAGTACAGGCAGCAGAAGCTTAAAAATCTG
CAGATACAGCGCAAAGCCTACGAGCGCCAGCAGGCGGAGATTGCGCACAATAATGAGCTTATCGACAAATTCAAGCATAA
GCCGAAAAAAGCTGCGTTTGCACGCTCTAGAAAGACCATGCTGGCACGCATGAAGCTGATAGAAAAGCCGGTTGAAGACG
AAGCTCATATTTTTACAGGCAATATCGAGCCACAGTTTCCGGGCGGTAAATGGGTTTACGAGGCGAAGAAATTAAAAATT
GGCTACGACGGCAGGGCACTGCTTGAGCTGTCGCTTCGTATAAGGCGTGGTCAGAAGATTGCCGTAATCGGTGACAACGG
CATAGGAAAATCAACATTTCTAAAGACTGTGGCAGGGCTTATTCCACCAATAAAGGGCACAAGCCAGCTTGGCAGCAATC
TGCTGGTGGGCTATTTTGACCAGCAGTCGGCACTTATCGACAGCGAAAAGACTGTGCGAGACCATTTTCACGAGCTTTTT
CCGGCACTTGTGGAGAAGGAATTAAGAAAGACGCTTGGCATGTATCTGTTTGGAGGGGCAAATGCCTCAAAGCGTATCAG
CTCGCTCTCAGGCGGTGAGAAGTCCAGGCTTGTGCTCGCAGAGCTTCTGACAGGCCGTCCGAACTTAATGATACTCGATG
AGCCGACCAATCACATGGATATTCCGGCGAAGGAGACACTAGAATCGGCATTTAAGGCATATACCGGCACCATGCTCTTT
GTATCGCATGACAGGTATTTCATAAAGCAGGTGGCCGATGCCATATTGGTCTTTGAAAATGACAAGGTGATGTACTATCC
GTTTGGCTATGACCATTATATTTCAAGGCTTAAGGCATCAAAGGATGGCAATCTGCCGGCACTCATGCAGGCAAAGGATG
CTGCGATGGTCGAGGCACTTGCGGCTGTCCCAAAGAGGGAGCGACATGAGACCAGACAGCTTTCAACAGAAGAGGCGTAC
TTAGAGTGGAAGCTTGCACTTGCAGCGGAGCCGGTGGCGAAGGCGGCTGAAGAAGCAGAAAAGGTTTATGAAGAGCTATG
TGAAGCAGAAAGCGAGCTTAACGAAGAAAATGTCGATAAGCTGCGACTGCAATATGAAAAAGTTGCTGACTCATGGACAA
ATGAGTGTACAAAATGGTATGATATATACTTAGATGAGATGTATCCGGAGAGTGATTTTTAA

Upstream 100 bases:

>100_bases
TCACAGTTACAAAGCCGGGTCAGGAGCCGGTTACGTCCAATATCAGGGTTTTACAGTCGGATCTCGAACTTTTGGACAGC
TTGAAGGATATTAATTAGAT

Downstream 100 bases:

>100_bases
TTTGCAGACATAAGGGAATCAATGACAATTGCTGTATATCATAAATTATCCGGGGAGAAAGGATTATATATGTGGTTATC
AAGATATTTTGTGTATTTTA

Product: ABC transporter ATP-binding protein uup

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MLYQIKDGTVSVGGQTILSHVDFYIKEKEKIAVVGKNGAGKTTLLRLLAGELQLDRDDRRGMSSGAHGKETACKNSLGIV
TSRNITIGMLRQVDSSNQDKTIEEILLESCPDRDTYSKERFDYEMEYDRLFTGFGFEKEEKSRTLGSFSGGEQTKISLIK
LLLEKPDLLLLDEPTNHLDMKTVEWLEDYLINYPKAVVIVSHDRAFLDAVATGVYELENGSLHRYAGNYTQYRQQKLKNL
QIQRKAYERQQAEIAHNNELIDKFKHKPKKAAFARSRKTMLARMKLIEKPVEDEAHIFTGNIEPQFPGGKWVYEAKKLKI
GYDGRALLELSLRIRRGQKIAVIGDNGIGKSTFLKTVAGLIPPIKGTSQLGSNLLVGYFDQQSALIDSEKTVRDHFHELF
PALVEKELRKTLGMYLFGGANASKRISSLSGGEKSRLVLAELLTGRPNLMILDEPTNHMDIPAKETLESAFKAYTGTMLF
VSHDRYFIKQVADAILVFENDKVMYYPFGYDHYISRLKASKDGNLPALMQAKDAAMVEALAAVPKRERHETRQLSTEEAY
LEWKLALAAEPVAKAAEEAEKVYEELCEAESELNEENVDKLRLQYEKVADSWTNECTKWYDIYLDEMYPESDF

Sequences:

>Translated_633_residues
MLYQIKDGTVSVGGQTILSHVDFYIKEKEKIAVVGKNGAGKTTLLRLLAGELQLDRDDRRGMSSGAHGKETACKNSLGIV
TSRNITIGMLRQVDSSNQDKTIEEILLESCPDRDTYSKERFDYEMEYDRLFTGFGFEKEEKSRTLGSFSGGEQTKISLIK
LLLEKPDLLLLDEPTNHLDMKTVEWLEDYLINYPKAVVIVSHDRAFLDAVATGVYELENGSLHRYAGNYTQYRQQKLKNL
QIQRKAYERQQAEIAHNNELIDKFKHKPKKAAFARSRKTMLARMKLIEKPVEDEAHIFTGNIEPQFPGGKWVYEAKKLKI
GYDGRALLELSLRIRRGQKIAVIGDNGIGKSTFLKTVAGLIPPIKGTSQLGSNLLVGYFDQQSALIDSEKTVRDHFHELF
PALVEKELRKTLGMYLFGGANASKRISSLSGGEKSRLVLAELLTGRPNLMILDEPTNHMDIPAKETLESAFKAYTGTMLF
VSHDRYFIKQVADAILVFENDKVMYYPFGYDHYISRLKASKDGNLPALMQAKDAAMVEALAAVPKRERHETRQLSTEEAY
LEWKLALAAEPVAKAAEEAEKVYEELCEAESELNEENVDKLRLQYEKVADSWTNECTKWYDIYLDEMYPESDF
>Mature_633_residues
MLYQIKDGTVSVGGQTILSHVDFYIKEKEKIAVVGKNGAGKTTLLRLLAGELQLDRDDRRGMSSGAHGKETACKNSLGIV
TSRNITIGMLRQVDSSNQDKTIEEILLESCPDRDTYSKERFDYEMEYDRLFTGFGFEKEEKSRTLGSFSGGEQTKISLIK
LLLEKPDLLLLDEPTNHLDMKTVEWLEDYLINYPKAVVIVSHDRAFLDAVATGVYELENGSLHRYAGNYTQYRQQKLKNL
QIQRKAYERQQAEIAHNNELIDKFKHKPKKAAFARSRKTMLARMKLIEKPVEDEAHIFTGNIEPQFPGGKWVYEAKKLKI
GYDGRALLELSLRIRRGQKIAVIGDNGIGKSTFLKTVAGLIPPIKGTSQLGSNLLVGYFDQQSALIDSEKTVRDHFHELF
PALVEKELRKTLGMYLFGGANASKRISSLSGGEKSRLVLAELLTGRPNLMILDEPTNHMDIPAKETLESAFKAYTGTMLF
VSHDRYFIKQVADAILVFENDKVMYYPFGYDHYISRLKASKDGNLPALMQAKDAAMVEALAAVPKRERHETRQLSTEEAY
LEWKLALAAEPVAKAAEEAEKVYEELCEAESELNEENVDKLRLQYEKVADSWTNECTKWYDIYLDEMYPESDF

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=552, Percent_Identity=30.9782608695652, Blast_Score=259, Evalue=4e-69,
Organism=Homo sapiens, GI10947137, Length=555, Percent_Identity=29.5495495495495, Blast_Score=222, Evalue=8e-58,
Organism=Homo sapiens, GI27881506, Length=529, Percent_Identity=30.0567107750473, Blast_Score=217, Evalue=2e-56,
Organism=Homo sapiens, GI10947135, Length=536, Percent_Identity=30.5970149253731, Blast_Score=197, Evalue=2e-50,
Organism=Homo sapiens, GI69354671, Length=536, Percent_Identity=30.5970149253731, Blast_Score=197, Evalue=3e-50,
Organism=Homo sapiens, GI31657092, Length=274, Percent_Identity=28.4671532846715, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI1789751, Length=634, Percent_Identity=30.2839116719243, Blast_Score=282, Evalue=6e-77,
Organism=Escherichia coli, GI1787182, Length=646, Percent_Identity=29.4117647058824, Blast_Score=229, Evalue=5e-61,
Organism=Escherichia coli, GI1787041, Length=555, Percent_Identity=28.4684684684685, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI2367384, Length=550, Percent_Identity=30.9090909090909, Blast_Score=222, Evalue=6e-59,
Organism=Escherichia coli, GI1788165, Length=180, Percent_Identity=28.8888888888889, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI48995001, Length=528, Percent_Identity=22.7272727272727, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=196, Percent_Identity=29.5918367346939, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=26.5116279069767, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=23.7442922374429, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787712, Length=205, Percent_Identity=25.8536585365854, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1786563, Length=178, Percent_Identity=29.2134831460674, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788761, Length=202, Percent_Identity=28.2178217821782, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=26.3392857142857, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1790467, Length=253, Percent_Identity=23.3201581027668, Blast_Score=63, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17553372, Length=524, Percent_Identity=31.2977099236641, Blast_Score=234, Evalue=1e-61,
Organism=Caenorhabditis elegans, GI17559834, Length=548, Percent_Identity=29.1970802919708, Blast_Score=215, Evalue=5e-56,
Organism=Caenorhabditis elegans, GI17555318, Length=532, Percent_Identity=28.1954887218045, Blast_Score=212, Evalue=4e-55,
Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=31.1111111111111, Blast_Score=233, Evalue=1e-61,
Organism=Saccharomyces cerevisiae, GI6320874, Length=523, Percent_Identity=28.8718929254302, Blast_Score=195, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6325030, Length=378, Percent_Identity=27.2486772486773, Blast_Score=127, Evalue=5e-30,
Organism=Saccharomyces cerevisiae, GI6323278, Length=375, Percent_Identity=26.1333333333333, Blast_Score=120, Evalue=6e-28,
Organism=Saccharomyces cerevisiae, GI6324314, Length=375, Percent_Identity=25.3333333333333, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=33.8317757009346, Blast_Score=273, Evalue=2e-73,
Organism=Drosophila melanogaster, GI24641342, Length=554, Percent_Identity=28.8808664259928, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI24642252, Length=545, Percent_Identity=29.9082568807339, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI18859989, Length=545, Percent_Identity=29.9082568807339, Blast_Score=223, Evalue=3e-58,
Organism=Drosophila melanogaster, GI28574259, Length=185, Percent_Identity=27.027027027027, Blast_Score=69, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 71829; Mature: 71829

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYQIKDGTVSVGGQTILSHVDFYIKEKEKIAVVGKNGAGKTTLLRLLAGELQLDRDDRR
CEEEECCCCEECCHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHC
GMSSGAHGKETACKNSLGIVTSRNITIGMLRQVDSSNQDKTIEEILLESCPDRDTYSKER
CCCCCCCCCHHHHCCCCCEEEECCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHH
FDYEMEYDRLFTGFGFEKEEKSRTLGSFSGGEQTKISLIKLLLEKPDLLLLDEPTNHLDM
CCCEECHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCH
KTVEWLEDYLINYPKAVVIVSHDRAFLDAVATGVYELENGSLHRYAGNYTQYRQQKLKNL
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEECCCCHHHHHHHHHHHH
QIQRKAYERQQAEIAHNNELIDKFKHKPKKAAFARSRKTMLARMKLIEKPVEDEAHIFTG
HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
NIEPQFPGGKWVYEAKKLKIGYDGRALLELSLRIRRGQKIAVIGDNGIGKSTFLKTVAGL
CCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
IPPIKGTSQLGSNLLVGYFDQQSALIDSEKTVRDHFHELFPALVEKELRKTLGMYLFGGA
CCCCCCHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC
NASKRISSLSGGEKSRLVLAELLTGRPNLMILDEPTNHMDIPAKETLESAFKAYTGTMLF
CHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEE
VSHDRYFIKQVADAILVFENDKVMYYPFGYDHYISRLKASKDGNLPALMQAKDAAMVEAL
EECCHHHHHHHHCEEEEEECCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AAVPKRERHETRQLSTEEAYLEWKLALAAEPVAKAAEEAEKVYEELCEAESELNEENVDK
HHCCCHHHHHHHHCCCHHHHHEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRLQYEKVADSWTNECTKWYDIYLDEMYPESDF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLYQIKDGTVSVGGQTILSHVDFYIKEKEKIAVVGKNGAGKTTLLRLLAGELQLDRDDRR
CEEEECCCCEECCHHHHHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHC
GMSSGAHGKETACKNSLGIVTSRNITIGMLRQVDSSNQDKTIEEILLESCPDRDTYSKER
CCCCCCCCCHHHHCCCCCEEEECCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHH
FDYEMEYDRLFTGFGFEKEEKSRTLGSFSGGEQTKISLIKLLLEKPDLLLLDEPTNHLDM
CCCEECHHHHHHCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCH
KTVEWLEDYLINYPKAVVIVSHDRAFLDAVATGVYELENGSLHRYAGNYTQYRQQKLKNL
HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHEEECCCCEEECCCCHHHHHHHHHHHH
QIQRKAYERQQAEIAHNNELIDKFKHKPKKAAFARSRKTMLARMKLIEKPVEDEAHIFTG
HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
NIEPQFPGGKWVYEAKKLKIGYDGRALLELSLRIRRGQKIAVIGDNGIGKSTFLKTVAGL
CCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
IPPIKGTSQLGSNLLVGYFDQQSALIDSEKTVRDHFHELFPALVEKELRKTLGMYLFGGA
CCCCCCHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCC
NASKRISSLSGGEKSRLVLAELLTGRPNLMILDEPTNHMDIPAKETLESAFKAYTGTMLF
CHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEE
VSHDRYFIKQVADAILVFENDKVMYYPFGYDHYISRLKASKDGNLPALMQAKDAAMVEAL
EECCHHHHHHHHCEEEEEECCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
AAVPKRERHETRQLSTEEAYLEWKLALAAEPVAKAAEEAEKVYEELCEAESELNEENVDK
HHCCCHHHHHHHHCCCHHHHHEEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LRLQYEKVADSWTNECTKWYDIYLDEMYPESDF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]